Analysis of interatomic Contacts of Structural Units in PDB entry:
5N28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N28 entry

There are 9 chains in PDB entry 5N28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LYS 259
A	ALA 261	ARG 273
A	ALA 275	SER 401
A	ARG 403	GLY 428
A	TYR 430	TYR 446
A	TYR 448	ALA 551
B	VAL 2	ILE 444
C	TYR 3	LEU 260
D	LYS 5	ALA 37

There are147 helices in PDB entry 5N28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	31	35	Right-handed 310
Helix 3	AA3	A	36	49	Right-handed alpha
Helix 4	AA4	A	50	52	Right-handed 310
Helix 5	AA5	A	85	90	Right-handed 310
Helix 6	AA6	A	94	106	Right-handed alpha
Helix 7	AA7	A	112	122	Right-handed alpha
Helix 8	AA8	A	128	143	Right-handed alpha
Helix 9	AA9	A	157	161	Right-handed 310
Helix 10	AB1	A	172	177	Right-handed alpha
Helix 11	AB2	A	186	191	Right-handed alpha
Helix 12	AB3	A	192	204	Right-handed alpha
Helix 13	AB4	A	214	221	Right-handed alpha
Helix 14	AB5	A	222	224	Right-handed 310
Helix 15	AB6	A	225	243	Right-handed alpha
Helix 16	AB7	A	250	260	Right-handed alpha
Helix 17	AB8	A	271	275	Right-handed 310
Helix 18	AB9	A	280	284	Right-handed 310
Helix 19	AC1	A	285	293	Right-handed alpha
Helix 20	AC2	A	294	298	Right-handed 310
Helix 21	AC3	A	301	319	Right-handed alpha
Helix 22	AC4	A	332	341	Right-handed alpha
Helix 23	AC5	A	343	358	Right-handed alpha
Helix 24	AC6	A	368	390	Right-handed alpha
Helix 25	AC7	A	390	397	Right-handed alpha
Helix 26	AC8	A	399	420	Right-handed alpha
Helix 27	AC9	A	421	441	Right-handed alpha
Helix 28	AD1	A	449	454	Right-handed alpha
Helix 29	AD2	A	454	460	Right-handed alpha
Helix 30	AD3	A	469	473	Right-handed 310
Helix 31	AD4	A	477	481	Right-handed 310
Helix 32	AD5	A	486	500	Right-handed alpha
Helix 33	AD6	A	508	515	Right-handed alpha
Helix 34	AD7	A	526	536	Right-handed alpha
Helix 35	AD8	A	545	549	Right-handed 310
Helix 36	AD9	B	25	28	Right-handed 310
Helix 37	AE1	B	32	44	Right-handed alpha
Helix 38	AE2	B	49	60	Right-handed alpha
Helix 39	AE3	B	81	94	Right-handed alpha
Helix 40	AE4	B	117	123	Right-handed alpha
Helix 41	AE5	B	128	147	Right-handed alpha
Helix 42	AE6	B	153	162	Right-handed alpha
Helix 43	AE7	B	181	185	Right-handed 310
Helix 44	AE8	B	190	194	Right-handed 310
Helix 45	AE9	B	196	204	Right-handed alpha
Helix 46	AF1	B	207	226	Right-handed alpha
Helix 47	AF2	B	230	232	Right-handed 310
Helix 48	AF3	B	233	245	Right-handed alpha
Helix 49	AF4	B	247	249	Right-handed 310
Helix 50	AF5	B	250	260	Right-handed alpha
Helix 51	AF6	B	264	279	Right-handed alpha
Helix 52	AF7	B	289	291	Right-handed 310
Helix 53	AF8	B	299	323	Right-handed alpha
Helix 54	AF9	B	324	326	Right-handed 310
Helix 55	AG1	B	327	344	Right-handed alpha
Helix 56	AG2	B	347	350	Right-handed 310
Helix 57	AG3	B	351	363	Right-handed alpha
Helix 58	AG4	B	372	376	Right-handed 310
Helix 59	AG5	B	390	401	Right-handed alpha
Helix 60	AG6	B	408	413	Right-handed alpha
Helix 61	AG7	B	413	421	Right-handed alpha
Helix 62	AG8	B	423	428	Right-handed alpha
Helix 63	AG9	B	428	441	Right-handed alpha
Helix 64	AH1	C	12	23	Right-handed alpha
Helix 65	AH2	C	35	44	Right-handed alpha
Helix 66	AH3	C	58	62	Right-handed 310
Helix 67	AH4	C	69	73	Right-handed 310
Helix 68	AH5	C	76	81	Right-handed alpha
Helix 69	AH6	C	100	112	Right-handed alpha
Helix 70	AH7	C	130	140	Right-handed alpha
Helix 71	AH8	C	210	216	Right-handed alpha
Helix 72	AH9	C	227	230	Right-handed 310
Helix 73	AI1	C	231	251	Right-handed alpha
Helix 74	AI2	C	255	260	Right-handed 310
Helix 75	AI3	D	8	13	Right-handed alpha
Helix 76	AI4	D	31	35	Right-handed 310
Helix 77	AI5	D	36	49	Right-handed alpha
Helix 78	AI6	D	85	90	Right-handed 310
Helix 79	AI7	D	94	106	Right-handed alpha
Helix 80	AI8	D	112	122	Right-handed alpha
Helix 81	AI9	D	128	143	Right-handed alpha
Helix 82	AJ1	D	157	161	Right-handed 310
Helix 83	AJ2	D	172	177	Right-handed alpha
Helix 84	AJ3	D	186	191	Right-handed alpha
Helix 85	AJ4	D	192	204	Right-handed alpha
Helix 86	AJ5	D	214	221	Right-handed alpha
Helix 87	AJ6	D	222	224	Right-handed 310
Helix 88	AJ7	D	225	242	Right-handed alpha
Helix 89	AJ8	D	250	260	Right-handed alpha
Helix 90	AJ9	D	271	275	Right-handed 310
Helix 91	AK1	D	280	284	Right-handed 310
Helix 92	AK2	D	285	293	Right-handed alpha
Helix 93	AK3	D	294	298	Right-handed 310
Helix 94	AK4	D	301	319	Right-handed alpha
Helix 95	AK5	D	332	338	Right-handed alpha
Helix 96	AK6	D	343	360	Right-handed alpha
Helix 97	AK7	D	368	390	Right-handed alpha
Helix 98	AK8	D	390	397	Right-handed alpha
Helix 99	AK9	D	399	420	Right-handed alpha
Helix 100	AL1	D	421	441	Right-handed alpha
Helix 101	AL2	D	449	454	Right-handed alpha
Helix 102	AL3	D	454	460	Right-handed alpha
Helix 103	AL4	D	469	473	Right-handed 310
Helix 104	AL5	D	477	481	Right-handed 310
Helix 105	AL6	D	486	500	Right-handed alpha
Helix 106	AL7	D	508	515	Right-handed alpha
Helix 107	AL8	D	526	536	Right-handed alpha
Helix 108	AL9	D	545	549	Right-handed 310
Helix 109	AM1	E	25	28	Right-handed 310
Helix 110	AM2	E	32	44	Right-handed alpha
Helix 111	AM3	E	49	60	Right-handed alpha
Helix 112	AM4	E	81	94	Right-handed alpha
Helix 113	AM5	E	117	123	Right-handed alpha
Helix 114	AM6	E	128	147	Right-handed alpha
Helix 115	AM7	E	153	162	Right-handed alpha
Helix 116	AM8	E	181	185	Right-handed 310
Helix 117	AM9	E	190	194	Right-handed 310
Helix 118	AN1	E	196	204	Right-handed alpha
Helix 119	AN2	E	207	226	Right-handed alpha
Helix 120	AN3	E	230	232	Right-handed 310
Helix 121	AN4	E	233	245	Right-handed alpha
Helix 122	AN5	E	247	249	Right-handed 310
Helix 123	AN6	E	250	260	Right-handed alpha
Helix 124	AN7	E	264	279	Right-handed alpha
Helix 125	AN8	E	289	291	Right-handed 310
Helix 126	AN9	E	299	323	Right-handed alpha
Helix 127	AO1	E	324	326	Right-handed 310
Helix 128	AO2	E	327	344	Right-handed alpha
Helix 129	AO3	E	347	350	Right-handed 310
Helix 130	AO4	E	351	363	Right-handed alpha
Helix 131	AO5	E	372	376	Right-handed 310
Helix 132	AO6	E	390	401	Right-handed alpha
Helix 133	AO7	E	408	413	Right-handed alpha
Helix 134	AO8	E	413	421	Right-handed alpha
Helix 135	AO9	E	423	428	Right-handed alpha
Helix 136	AP1	E	428	441	Right-handed alpha
Helix 137	AP2	F	12	23	Right-handed alpha
Helix 138	AP3	F	35	44	Right-handed alpha
Helix 139	AP4	F	58	62	Right-handed 310
Helix 140	AP5	F	69	73	Right-handed 310
Helix 141	AP6	F	76	81	Right-handed alpha
Helix 142	AP7	F	100	112	Right-handed alpha
Helix 143	AP8	F	130	140	Right-handed alpha
Helix 144	AP9	F	210	215	Right-handed alpha
Helix 145	AQ1	F	227	230	Right-handed 310
Helix 146	AQ2	F	231	251	Right-handed alpha
Helix 147	AQ3	F	255	260	Right-handed 310

There are 14 sheets in PDB entry 5N28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	83	84	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	107	111	anti-parallel
Strand 4	A	263	265	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	48	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	287	first strand
Strand 2	B	293	297	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	152	154	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	188	192	anti-parallel
Strand 3	C	198	204	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	83	84	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	107	111	anti-parallel
Strand 4	D	263	265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	48	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	287	first strand
Strand 2	E	293	297	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	119	first strand
Strand 2	F	124	129	anti-parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	152	154	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	188	192	anti-parallel
Strand 3	F	198	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N28

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N28