Analysis of interatomic Contacts of Structural Units in PDB entry:
5N2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N2V entry

There are 6 chains in PDB entry 5N2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 125
B
 SER 2ARG 236
C
 ILE 156LEU 178
D
 ALA 0LEU 125
E
 SER 2ARG 236
F
 ILE 156LEU 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5N2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 20Right-handed alpha
Helix 2
AA2
A
83 85Right-handed 310
Helix 3
AA3
A
110 125Right-handed alpha
Helix 4
AA4
B
7 20Right-handed alpha
Helix 5
AA5
B
24 28Right-handed 310
Helix 6
AA6
B
30 48Right-handed alpha
Helix 7
AA7
B
48 53Right-handed alpha
Helix 8
AA8
B
60 70Right-handed alpha
Helix 9
AA9
B
72 79Right-handed 310
Helix 10
AB1
B
81 94Right-handed alpha
Helix 11
AB2
B
135 149Right-handed alpha
Helix 12
AB3
B
202 204Right-handed 310
Helix 13
AB4
B
222 236Right-handed alpha
Helix 14
AB5
C
168 172Right-handed 310
Helix 15
AB6
D
1 20Right-handed alpha
Helix 16
AB7
D
83 85Right-handed 310
Helix 17
AB8
D
110 125Right-handed alpha
Helix 18
AB9
E
7 20Right-handed alpha
Helix 19
AC1
E
24 28Right-handed 310
Helix 20
AC2
E
30 48Right-handed alpha
Helix 21
AC3
E
48 53Right-handed alpha
Helix 22
AC4
E
60 70Right-handed alpha
Helix 23
AC5
E
72 79Right-handed 310
Helix 24
AC6
E
81 94Right-handed alpha
Helix 25
AC7
E
135 149Right-handed alpha
Helix 26
AC8
E
202 204Right-handed 310
Helix 27
AC9
E
222 236Right-handed alpha
Helix 28
AD1
F
168 172Right-handed 310
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There are 8 sheets in PDB entry 5N2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
23 39anti-parallel
Strand 3
A
51 59anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
77 80anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
23 39anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
87 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
98 105anti-parallel
Strand 3
B
169 179parallel
Strand 4
B
161 166anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
110 115anti-parallel
Strand 3
B
195 200anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
23 39anti-parallel
Strand 3
D
51 59anti-parallel
Strand 4
D
64 70anti-parallel
Strand 5
D
77 80anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
23 39anti-parallel
Strand 3
D
102 108anti-parallel
Strand 4
D
93 98anti-parallel
Strand 5
D
87 90anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 129first strand
Strand 2
E
98 105anti-parallel
Strand 3
E
169 179parallel
Strand 4
E
161 166anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 124first strand
Strand 2
E
110 115anti-parallel
Strand 3
E
195 200anti-parallel
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