Analysis of interatomic Contacts of Structural Units in PDB entry:
5N47

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N47 entry

There are 6 chains in PDB entry 5N47 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	SER 182
B	VAL 1267	SER 1449
C	ASP 2	ASP 177
D	PRO 1173	HIS 1452
E	ASP 6	ASP 177
F	PRO 1173	SER 1449

There are 13 helices in PDB entry 5N47. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	23	28	Right-handed alpha
Helix 3	AA3	A	145	159	Right-handed alpha
Helix 4	AA4	A	162	164	Right-handed 310
Helix 5	AA5	C	12	16	Right-handed 310
Helix 6	AA6	C	23	28	Right-handed alpha
Helix 7	AA7	C	145	159	Right-handed alpha
Helix 8	AA8	C	162	164	Right-handed 310
Helix 9	AA9	D	1397	1399	Right-handed 310
Helix 10	AB1	E	12	16	Right-handed 310
Helix 11	AB2	E	23	28	Right-handed alpha
Helix 12	AB3	E	145	159	Right-handed alpha
Helix 13	AB4	E	162	164	Right-handed 310

There are 27 sheets in PDB entry 5N47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	A	130	139	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	106	113	anti-parallel
Strand 6	A	91	94	anti-parallel
Strand 7	A	75	85	anti-parallel
Strand 8	A	64	72	anti-parallel
Strand 9	A	53	58	anti-parallel
Strand 10	A	29	38	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1274	1276	first strand
Strand 2	B	1283	1286	anti-parallel
Strand 3	B	1322	1325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1309	1317	first strand
Strand 2	B	1297	1304	anti-parallel
Strand 3	B	1333	1342	anti-parallel
Strand 4	B	1345	1346	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1309	1317	first strand
Strand 2	B	1297	1304	anti-parallel
Strand 3	B	1333	1342	anti-parallel
Strand 4	B	1350	1355	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1362	1367	first strand
Strand 2	B	1374	1379	anti-parallel
Strand 3	B	1413	1416	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1403	1407	first strand
Strand 2	B	1388	1395	anti-parallel
Strand 3	B	1424	1433	anti-parallel
Strand 4	B	1436	1437	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1403	1407	first strand
Strand 2	B	1388	1395	anti-parallel
Strand 3	B	1424	1433	anti-parallel
Strand 4	B	1441	1446	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	29	38	anti-parallel
Strand 3	C	130	139	anti-parallel
Strand 4	C	118	127	anti-parallel
Strand 5	C	106	113	anti-parallel
Strand 6	C	91	94	anti-parallel
Strand 7	C	75	85	anti-parallel
Strand 8	C	64	72	anti-parallel
Strand 9	C	53	58	anti-parallel
Strand 10	C	29	38	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1178	1184	first strand
Strand 2	D	1191	1196	anti-parallel
Strand 3	D	1231	1234	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1221	1226	first strand
Strand 2	D	1205	1212	anti-parallel
Strand 3	D	1243	1251	anti-parallel
Strand 4	D	1254	1255	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1221	1226	first strand
Strand 2	D	1205	1212	anti-parallel
Strand 3	D	1243	1251	anti-parallel
Strand 4	D	1259	1263	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1274	1276	first strand
Strand 2	D	1282	1286	anti-parallel
Strand 3	D	1322	1326	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1309	1317	first strand
Strand 2	D	1295	1304	anti-parallel
Strand 3	D	1333	1342	anti-parallel
Strand 4	D	1345	1346	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1309	1317	first strand
Strand 2	D	1295	1304	anti-parallel
Strand 3	D	1333	1342	anti-parallel
Strand 4	D	1350	1355	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1362	1367	first strand
Strand 2	D	1374	1379	anti-parallel
Strand 3	D	1413	1416	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1403	1407	first strand
Strand 2	D	1388	1395	anti-parallel
Strand 3	D	1424	1433	anti-parallel
Strand 4	D	1436	1437	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1403	1407	first strand
Strand 2	D	1388	1395	anti-parallel
Strand 3	D	1424	1433	anti-parallel
Strand 4	D	1441	1446	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	29	38	anti-parallel
Strand 3	E	130	139	anti-parallel
Strand 4	E	118	127	anti-parallel
Strand 5	E	106	113	anti-parallel
Strand 6	E	91	94	anti-parallel
Strand 7	E	75	85	anti-parallel
Strand 8	E	64	72	anti-parallel
Strand 9	E	53	58	anti-parallel
Strand 10	E	29	38	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1178	1184	first strand
Strand 2	F	1191	1196	anti-parallel
Strand 3	F	1231	1234	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1221	1226	first strand
Strand 2	F	1205	1212	anti-parallel
Strand 3	F	1243	1251	anti-parallel
Strand 4	F	1254	1255	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1221	1226	first strand
Strand 2	F	1205	1212	anti-parallel
Strand 3	F	1243	1251	anti-parallel
Strand 4	F	1259	1263	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1274	1279	first strand
Strand 2	F	1282	1286	anti-parallel
Strand 3	F	1322	1326	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1309	1317	first strand
Strand 2	F	1295	1304	anti-parallel
Strand 3	F	1333	1342	anti-parallel
Strand 4	F	1345	1346	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1309	1317	first strand
Strand 2	F	1295	1304	anti-parallel
Strand 3	F	1333	1342	anti-parallel
Strand 4	F	1350	1355	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1362	1367	first strand
Strand 2	F	1374	1379	anti-parallel
Strand 3	F	1413	1416	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1403	1407	first strand
Strand 2	F	1388	1395	anti-parallel
Strand 3	F	1424	1433	anti-parallel
Strand 4	F	1436	1437	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1403	1407	first strand
Strand 2	F	1388	1395	anti-parallel
Strand 3	F	1424	1433	anti-parallel
Strand 4	F	1441	1446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N47

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N47