Analysis of interatomic Contacts of Structural Units in PDB entry:
5N4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N4F entry

There is 1 chain in PDB entry 5N4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7LEU 726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5N4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed 310
Helix 2
AA2
A
44 64Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
123 127Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
181 188Right-handed alpha
Helix 7
AA7
A
244 248Right-handed 310
Helix 8
AA8
A
437 440Right-handed 310
Helix 9
AA9
A
454 456Right-handed 310
Helix 10
AB1
A
508 519Right-handed alpha
Helix 11
AB2
A
533 540Right-handed alpha
Helix 12
AB3
A
541 545Right-handed 310
Helix 13
AB4
A
546 563Right-handed alpha
Helix 14
AB5
A
577 590Right-handed alpha
Helix 15
AB6
A
609 613Right-handed 310
Helix 16
AB7
A
616 618Right-handed 310
Helix 17
AB8
A
619 624Right-handed alpha
Helix 18
AB9
A
628 636Right-handed alpha
Helix 19
AC1
A
637 643Right-handed 310
Helix 20
AC2
A
666 680Right-handed alpha
Helix 21
AC3
A
708 722Right-handed alpha
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There are 10 sheets in PDB entry 5N4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
29 34anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
88 89anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
128 132anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 150first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
197 200anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
235 240anti-parallel
Strand 4
A
249 253anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
272 278anti-parallel
Strand 3
A
286 291anti-parallel
Strand 4
A
304 307anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 320first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
348 353anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 367first strand
Strand 2
A
371 377anti-parallel
Strand 3
A
382 388anti-parallel
Strand 4
A
393 397anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
415 421anti-parallel
Strand 3
A
428 433anti-parallel
Strand 4
A
442 447anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 466first strand
Strand 2
A
472 480anti-parallel
Strand 3
A
521 525anti-parallel
Strand 4
A
491 494parallel
Strand 5
A
571 576parallel
Strand 6
A
597 601parallel
Strand 7
A
652 657parallel
Strand 8
A
687 691parallel
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