Analysis of interatomic Contacts of Structural Units in PDB entry:
5N4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N4L entry

There are 2 chains in PDB entry 5N4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 1ASN 1034
B
ARG 1ASN 1034
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5N4L. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
29 38Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
164 171Right-handed alpha
Helix 5
AA5
A
212 220Right-handed alpha
Helix 6
AA6
A
230 237Right-handed alpha
Helix 7
AA7
A
320 325Right-handed alpha
Helix 8
AA8
A
385 390Right-handed alpha
Helix 9
AA9
A
421 426Right-handed 310
Helix 10
AB1
A
463 467Right-handed 310
Helix 11
AB2
A
497 501Right-handed 310
Helix 12
AB3
A
519 524Right-handed alpha
Helix 13
AB4
A
567 576Right-handed alpha
Helix 14
AB5
A
586 593Right-handed alpha
Helix 15
AB6
A
676 682Right-handed alpha
Helix 16
AB7
A
724 735Right-handed alpha
Helix 17
AB8
A
777 781Right-handed 310
Helix 18
AB9
A
837 841Right-handed 310
Helix 19
AC1
A
859 866Right-handed alpha
Helix 20
AC2
A
901 903Right-handed 310
Helix 21
AC3
A
905 914Right-handed alpha
Helix 22
AC4
A
926 931Right-handed alpha
Helix 23
AC5
A
1017 1024Right-handed alpha
Helix 24
AC6
B
29 38Right-handed alpha
Helix 25
AC7
B
121 125Right-handed 310
Helix 26
AC8
B
164 171Right-handed alpha
Helix 27
AC9
B
212 220Right-handed alpha
Helix 28
AD1
B
230 237Right-handed alpha
Helix 29
AD2
B
320 326Right-handed alpha
Helix 30
AD3
B
385 390Right-handed alpha
Helix 31
AD4
B
422 427Right-handed 310
Helix 32
AD5
B
463 467Right-handed 310
Helix 33
AD6
B
519 527Right-handed alpha
Helix 34
AD7
B
563 565Right-handed 310
Helix 35
AD8
B
568 574Right-handed alpha
Helix 36
AD9
B
578 582Right-handed 310
Helix 37
AE1
B
586 592Right-handed alpha
Helix 38
AE2
B
676 682Right-handed alpha
Helix 39
AE3
B
725 735Right-handed alpha
Helix 40
AE4
B
777 781Right-handed 310
Helix 41
AE5
B
859 867Right-handed alpha
Helix 42
AE6
B
901 903Right-handed 310
Helix 43
AE7
B
905 914Right-handed alpha
Helix 44
AE8
B
924 929Right-handed alpha
Helix 45
AE9
B
964 968Right-handed 310
Helix 46
AF1
B
981 985Right-handed 310
Helix 47
AF2
B
1017 1024Right-handed alpha
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There are 37 sheets in PDB entry 5N4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
64 65first strand
Strand 2
A
47 56anti-parallel
Strand 3
A
2 15anti-parallel
Strand 4
A
85 92parallel
Strand 5
A
135 141anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 81first strand
Strand 2
A
175 180parallel
Strand 3
A
154 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 240first strand
Strand 2
A
195 205anti-parallel
Strand 3
A
260 268parallel
Strand 4
A
301 307anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 255first strand
Strand 2
A
329 334parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
275 279anti-parallel
Strand 5
A
294 296anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
399 408first strand
Strand 2
A
351 364anti-parallel
Strand 3
A
440 447parallel
Strand 4
A
489 490anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
399 408first strand
Strand 2
A
351 364anti-parallel
Strand 3
A
440 447parallel
Strand 4
A
493 495anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
433 436first strand
Strand 2
A
529 535parallel
Strand 3
A
509 515anti-parallel
Strand 4
A
456 457anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
594 598first strand
Strand 2
A
551 561anti-parallel
Strand 3
A
617 622parallel
Strand 4
A
657 662anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
610 612first strand
Strand 2
A
685 691parallel
Strand 3
A
668 674anti-parallel
Strand 4
A
631 635anti-parallel
Strand 5
A
649 652anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
640 642first strand
Strand 2
A
645 647anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
753 762first strand
Strand 2
A
707 719anti-parallel
Strand 3
A
794 800parallel
Strand 4
A
829 835anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
787 790first strand
Strand 2
A
869 875parallel
Strand 3
A
850 855anti-parallel
Strand 4
A
810 811anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
932 936first strand
Strand 2
A
889 899anti-parallel
Strand 3
A
955 961parallel
Strand 4
A
997 1003anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
948 950first strand
Strand 2
A
1026 1032parallel
Strand 3
A
1009 1015anti-parallel
Strand 4
A
969 973anti-parallel
Strand 5
A
990 993anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
978 980first strand
Strand 2
A
986 988anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
64 65first strand
Strand 2
B
47 56anti-parallel
Strand 3
B
2 15anti-parallel
Strand 4
B
85 92parallel
Strand 5
B
135 141anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 81first strand
Strand 2
B
174 180parallel
Strand 3
B
154 160anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
185 186first strand
Strand 2
B
189 190anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
238 240first strand
Strand 2
B
195 205anti-parallel
Strand 3
B
260 268parallel
Strand 4
B
301 307anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 256first strand
Strand 2
B
331 335parallel
Strand 3
B
312 315anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
277 278first strand
Strand 2
B
293 294anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
284 285first strand
Strand 2
B
290 291anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
399 408first strand
Strand 2
B
351 364anti-parallel
Strand 3
B
440 448parallel
Strand 4
B
489 490anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
399 408first strand
Strand 2
B
351 364anti-parallel
Strand 3
B
440 448parallel
Strand 4
B
493 495anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
433 436first strand
Strand 2
B
529 535parallel
Strand 3
B
509 515anti-parallel
Strand 4
B
456 458anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
540 541first strand
Strand 2
B
545 546anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
594 598first strand
Strand 2
B
551 561anti-parallel
Strand 3
B
617 622parallel
Strand 4
B
660 662anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
610 612first strand
Strand 2
B
685 691parallel
Strand 3
B
668 674anti-parallel
Strand 4
B
633 635anti-parallel
Strand 5
B
649 650anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
640 642first strand
Strand 2
B
645 647anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
760 761first strand
Strand 2
B
707 712anti-parallel
Strand 3
B
794 800parallel
Strand 4
B
829 835anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
715 719first strand
Strand 2
B
753 757anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
787 790first strand
Strand 2
B
869 875parallel
Strand 3
B
851 855anti-parallel
Strand 4
B
810 811anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
932 936first strand
Strand 2
B
890 899anti-parallel
Strand 3
B
955 961parallel
Strand 4
B
998 1003anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
948 950first strand
Strand 2
B
1030 1032parallel
Strand 3
B
1009 1010anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
990 993first strand
Strand 2
B
969 973anti-parallel
Strand 3
B
1013 1015anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
978 980first strand
Strand 2
B
986 988anti-parallel
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