Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N5D entry

There are 2 chains in PDB entry 5N5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLY 222
B
 MET 0GLY 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5N5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 18Right-handed alpha
Helix 2
AA2
A
21 28Right-handed alpha
Helix 3
AA3
A
29 34Right-handed alpha
Helix 4
AA4
A
42 57Right-handed alpha
Helix 5
AA5
A
69 77Right-handed alpha
Helix 6
AA6
A
91 105Right-handed alpha
Helix 7
AA7
A
107 109Right-handed 310
Helix 8
AA8
A
117 122Right-handed alpha
Helix 9
AA9
A
123 126Right-handed 310
Helix 10
AB1
A
144 155Right-handed alpha
Helix 11
AB2
A
168 175Right-handed 310
Helix 12
AB3
A
180 195Right-handed alpha
Helix 13
AB4
B
1 18Right-handed alpha
Helix 14
AB5
B
21 28Right-handed alpha
Helix 15
AB6
B
29 35Right-handed alpha
Helix 16
AB7
B
42 57Right-handed alpha
Helix 17
AB8
B
69 77Right-handed alpha
Helix 18
AB9
B
91 105Right-handed alpha
Helix 19
AC1
B
107 109Right-handed 310
Helix 20
AC2
B
117 122Right-handed alpha
Helix 21
AC3
B
123 126Right-handed 310
Helix 22
AC4
B
144 155Right-handed alpha
Helix 23
AC5
B
168 175Right-handed 310
Helix 24
AC6
B
180 195Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5N5D.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
84 89parallel
Strand 3
A
60 64parallel
Strand 4
A
135 138parallel
Strand 5
A
161 165parallel
Strand 6
A
213 220anti-parallel
Strand 7
A
199 207anti-parallel
Strand 8
B
199 207anti-parallel
Strand 9
B
213 220anti-parallel
Strand 10
B
156 165anti-parallel
Strand 11
B
133 138parallel
Strand 12
B
60 64parallel
Strand 13
B
84 89parallel
Strand 14
B
111 115parallel
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