Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N5P entry

There are 4 chains in PDB entry 5N5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 740THR 877
B
 HIS 644GLY 730
C
 THR 740ASP 876
D
 HIS 644GLY 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5N5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
861 863Right-handed 310
Helix 2
AA2
B
661 674Right-handed alpha
Helix 3
AA3
B
675 678Right-handed 310
Helix 4
AA4
B
681 689Right-handed alpha
Helix 5
AA5
B
702 706Right-handed 310
Helix 6
AA6
B
709 721Right-handed alpha
Helix 7
AA7
C
861 863Right-handed 310
Helix 8
AA8
D
661 674Right-handed alpha
Helix 9
AA9
D
675 678Right-handed 310
Helix 10
AB1
D
681 689Right-handed alpha
Helix 11
AB2
D
702 706Right-handed 310
Helix 12
AB3
D
709 721Right-handed alpha
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There are 4 sheets in PDB entry 5N5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 794first strand
Strand 2
A
827 834anti-parallel
Strand 3
A
760 771anti-parallel
Strand 4
A
745 749anti-parallel
Strand 5
A
865 868parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 755first strand
Strand 2
A
870 874parallel
Strand 3
A
842 854anti-parallel
Strand 4
A
776 783anti-parallel
Strand 5
A
809 813anti-parallel
Strand 6
A
802 804anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
788 794first strand
Strand 2
C
827 834anti-parallel
Strand 3
C
760 771anti-parallel
Strand 4
C
745 749anti-parallel
Strand 5
C
865 868parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
752 755first strand
Strand 2
C
870 874parallel
Strand 3
C
842 854anti-parallel
Strand 4
C
776 783anti-parallel
Strand 5
C
809 813anti-parallel
Strand 6
C
802 804anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il