Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N5S entry

There are 3 chains in PDB entry 5N5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 18	LEU 497
B	VAL 17	LEU 497
C	VAL 17	SER 348

There are 72 helices in PDB entry 5N5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	77	Right-handed alpha
Helix 2	AA2	A	78	96	Right-handed alpha
Helix 3	AA3	A	96	109	Right-handed alpha
Helix 4	AA4	A	111	134	Right-handed alpha
Helix 5	AA5	A	146	150	Right-handed 310
Helix 6	AA6	A	174	188	Right-handed alpha
Helix 7	AA7	A	200	212	Right-handed alpha
Helix 8	AA8	A	232	237	Right-handed alpha
Helix 9	AA9	A	248	259	Right-handed alpha
Helix 10	AB1	A	282	296	Right-handed alpha
Helix 11	AB2	A	297	300	Right-handed 310
Helix 12	AB3	A	314	328	Right-handed alpha
Helix 13	AB4	A	346	363	Right-handed alpha
Helix 14	AB5	A	390	395	Right-handed alpha
Helix 15	AB6	A	409	418	Right-handed alpha
Helix 16	AB7	A	432	443	Right-handed alpha
Helix 17	AB8	A	466	468	Right-handed 310
Helix 18	AB9	A	475	483	Right-handed alpha
Helix 19	AC1	B	56	77	Right-handed alpha
Helix 20	AC2	B	78	96	Right-handed alpha
Helix 21	AC3	B	96	109	Right-handed alpha
Helix 22	AC4	B	111	134	Right-handed alpha
Helix 23	AC5	B	146	150	Right-handed 310
Helix 24	AC6	B	174	188	Right-handed alpha
Helix 25	AC7	B	200	212	Right-handed alpha
Helix 26	AC8	B	232	237	Right-handed alpha
Helix 27	AC9	B	248	259	Right-handed alpha
Helix 28	AD1	B	282	296	Right-handed alpha
Helix 29	AD2	B	297	300	Right-handed 310
Helix 30	AD3	B	314	328	Right-handed alpha
Helix 31	AD4	B	346	363	Right-handed alpha
Helix 32	AD5	B	390	395	Right-handed alpha
Helix 33	AD6	B	409	418	Right-handed alpha
Helix 34	AD7	B	432	443	Right-handed alpha
Helix 35	AD8	B	466	468	Right-handed 310
Helix 36	AD9	B	475	483	Right-handed alpha
Helix 37	AE1	C	56	77	Right-handed alpha
Helix 38	AE2	C	78	96	Right-handed alpha
Helix 39	AE3	C	96	109	Right-handed alpha
Helix 40	AE4	C	111	134	Right-handed alpha
Helix 41	AE5	C	146	150	Right-handed 310
Helix 42	AE6	C	174	188	Right-handed alpha
Helix 43	AE7	C	200	212	Right-handed alpha
Helix 44	AE8	C	232	237	Right-handed alpha
Helix 45	AE9	C	248	259	Right-handed alpha
Helix 46	AF1	C	282	296	Right-handed alpha
Helix 47	AF2	C	297	300	Right-handed 310
Helix 48	AF3	C	314	328	Right-handed alpha
Helix 49	AF4	C	346	363	Right-handed alpha
Helix 50	AF5	C	390	395	Right-handed alpha
Helix 51	AF6	C	409	418	Right-handed alpha
Helix 52	AF7	C	432	443	Right-handed alpha
Helix 53	AF8	C	466	468	Right-handed 310
Helix 54	AF9	C	475	483	Right-handed alpha
Helix 55	AG1	D	56	77	Right-handed alpha
Helix 56	AG2	D	78	96	Right-handed alpha
Helix 57	AG3	D	96	109	Right-handed alpha
Helix 58	AG4	D	111	133	Right-handed alpha
Helix 59	AG5	D	146	150	Right-handed 310
Helix 60	AG6	D	174	188	Right-handed alpha
Helix 61	AG7	D	200	212	Right-handed alpha
Helix 62	AG8	D	232	237	Right-handed alpha
Helix 63	AG9	D	248	259	Right-handed alpha
Helix 64	AH1	D	282	296	Right-handed alpha
Helix 65	AH2	D	297	300	Right-handed 310
Helix 66	AH3	D	314	328	Right-handed alpha
Helix 67	AH4	D	346	363	Right-handed alpha
Helix 68	AH5	D	390	395	Right-handed alpha
Helix 69	AH6	D	409	418	Right-handed alpha
Helix 70	AH7	D	432	443	Right-handed alpha
Helix 71	AH8	D	466	468	Right-handed 310
Helix 72	AH9	D	475	483	Right-handed alpha

There are 20 sheets in PDB entry 5N5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	48	53	parallel
Strand 3	A	37	41	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	29	31	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	484	492	anti-parallel
Strand 4	B	447	450	parallel
Strand 5	B	425	429	parallel
Strand 6	B	272	276	parallel
Strand 7	B	305	311	parallel
Strand 8	B	401	407	parallel
Strand 9	B	381	384	parallel
Strand 10	B	366	369	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	191	194	parallel
Strand 3	A	164	167	parallel
Strand 4	A	242	246	parallel
Strand 5	A	263	267	parallel
Strand 6	A	470	471	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	381	384	anti-parallel
Strand 3	A	401	407	parallel
Strand 4	A	305	311	parallel
Strand 5	A	272	276	parallel
Strand 6	A	425	429	parallel
Strand 7	A	447	450	parallel
Strand 8	B	484	492	parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	139	142	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	377	378	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	48	53	parallel
Strand 3	B	37	41	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	29	31	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	191	194	parallel
Strand 3	B	164	167	parallel
Strand 4	B	242	246	parallel
Strand 5	B	263	267	parallel
Strand 6	B	470	471	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	377	378	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	48	53	parallel
Strand 3	C	37	41	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	29	31	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	484	492	anti-parallel
Strand 4	D	447	450	parallel
Strand 5	D	425	429	parallel
Strand 6	D	272	276	parallel
Strand 7	D	305	311	parallel
Strand 8	D	401	407	parallel
Strand 9	D	381	384	parallel
Strand 10	D	366	369	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	191	194	parallel
Strand 3	C	164	167	parallel
Strand 4	C	242	246	parallel
Strand 5	C	263	267	parallel
Strand 6	C	470	471	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	369	first strand
Strand 2	C	381	384	anti-parallel
Strand 3	C	401	407	parallel
Strand 4	C	305	311	parallel
Strand 5	C	272	276	parallel
Strand 6	C	425	429	parallel
Strand 7	C	447	450	parallel
Strand 8	D	484	492	parallel
Strand 9	D	152	160	anti-parallel
Strand 10	D	139	142	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	377	378	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	48	53	parallel
Strand 3	D	37	41	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	29	31	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	D	191	194	parallel
Strand 3	D	164	167	parallel
Strand 4	D	242	246	parallel
Strand 5	D	263	267	parallel
Strand 6	D	470	471	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	377	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5S