Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N5V entry

There are 5 chains in PDB entry 5N5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 309
B	MET 1	SER 307
C	MET 1	LEU 306
D	MET 1	HIS 309
E	MET 1	GLU 17

There are120 helices in PDB entry 5N5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	16	25	Right-handed alpha
Helix 3	AA3	A	42	58	Right-handed alpha
Helix 4	AA4	A	67	74	Right-handed alpha
Helix 5	AA5	A	78	96	Right-handed alpha
Helix 6	AA6	A	106	108	Right-handed 310
Helix 7	AA7	A	111	123	Right-handed alpha
Helix 8	AA8	A	126	134	Right-handed alpha
Helix 9	AA9	A	146	163	Right-handed alpha
Helix 10	AB1	A	173	184	Right-handed alpha
Helix 11	AB2	A	218	229	Right-handed alpha
Helix 12	AB3	A	239	249	Right-handed alpha
Helix 13	AB4	A	258	262	Right-handed 310
Helix 14	AB5	A	269	279	Right-handed alpha
Helix 15	AB6	A	283	307	Right-handed alpha
Helix 16	AB7	B	2	9	Right-handed alpha
Helix 17	AB8	B	16	25	Right-handed alpha
Helix 18	AB9	B	42	58	Right-handed alpha
Helix 19	AC1	B	67	74	Right-handed alpha
Helix 20	AC2	B	78	96	Right-handed alpha
Helix 21	AC3	B	106	108	Right-handed 310
Helix 22	AC4	B	111	123	Right-handed alpha
Helix 23	AC5	B	126	134	Right-handed alpha
Helix 24	AC6	B	146	163	Right-handed alpha
Helix 25	AC7	B	173	184	Right-handed alpha
Helix 26	AC8	B	218	229	Right-handed alpha
Helix 27	AC9	B	239	249	Right-handed alpha
Helix 28	AD1	B	258	262	Right-handed 310
Helix 29	AD2	B	269	279	Right-handed alpha
Helix 30	AD3	B	283	306	Right-handed alpha
Helix 31	AD4	C	2	9	Right-handed alpha
Helix 32	AD5	C	16	25	Right-handed alpha
Helix 33	AD6	C	42	58	Right-handed alpha
Helix 34	AD7	C	67	74	Right-handed alpha
Helix 35	AD8	C	78	96	Right-handed alpha
Helix 36	AD9	C	106	108	Right-handed 310
Helix 37	AE1	C	111	123	Right-handed alpha
Helix 38	AE2	C	126	134	Right-handed alpha
Helix 39	AE3	C	146	163	Right-handed alpha
Helix 40	AE4	C	173	184	Right-handed alpha
Helix 41	AE5	C	218	229	Right-handed alpha
Helix 42	AE6	C	239	249	Right-handed alpha
Helix 43	AE7	C	258	262	Right-handed 310
Helix 44	AE8	C	269	279	Right-handed alpha
Helix 45	AE9	C	283	306	Right-handed alpha
Helix 46	AF1	D	2	9	Right-handed alpha
Helix 47	AF2	D	16	25	Right-handed alpha
Helix 48	AF3	D	42	58	Right-handed alpha
Helix 49	AF4	D	67	74	Right-handed alpha
Helix 50	AF5	D	78	96	Right-handed alpha
Helix 51	AF6	D	106	108	Right-handed 310
Helix 52	AF7	D	111	123	Right-handed alpha
Helix 53	AF8	D	126	134	Right-handed alpha
Helix 54	AF9	D	146	163	Right-handed alpha
Helix 55	AG1	D	173	184	Right-handed alpha
Helix 56	AG2	D	218	229	Right-handed alpha
Helix 57	AG3	D	239	249	Right-handed alpha
Helix 58	AG4	D	258	262	Right-handed 310
Helix 59	AG5	D	269	279	Right-handed alpha
Helix 60	AG6	D	283	307	Right-handed alpha
Helix 61	AG7	E	2	9	Right-handed alpha
Helix 62	AG8	E	16	25	Right-handed alpha
Helix 63	AG9	E	42	58	Right-handed alpha
Helix 64	AH1	E	67	74	Right-handed alpha
Helix 65	AH2	E	78	96	Right-handed alpha
Helix 66	AH3	E	106	108	Right-handed 310
Helix 67	AH4	E	111	123	Right-handed alpha
Helix 68	AH5	E	126	134	Right-handed alpha
Helix 69	AH6	E	146	163	Right-handed alpha
Helix 70	AH7	E	173	184	Right-handed alpha
Helix 71	AH8	E	218	229	Right-handed alpha
Helix 72	AH9	E	239	249	Right-handed alpha
Helix 73	AI1	E	258	262	Right-handed 310
Helix 74	AI2	E	269	279	Right-handed alpha
Helix 75	AI3	E	283	307	Right-handed alpha
Helix 76	AI4	F	2	9	Right-handed alpha
Helix 77	AI5	F	16	25	Right-handed alpha
Helix 78	AI6	F	42	58	Right-handed alpha
Helix 79	AI7	F	67	74	Right-handed alpha
Helix 80	AI8	F	78	96	Right-handed alpha
Helix 81	AI9	F	106	108	Right-handed 310
Helix 82	AJ1	F	111	123	Right-handed alpha
Helix 83	AJ2	F	126	134	Right-handed alpha
Helix 84	AJ3	F	146	163	Right-handed alpha
Helix 85	AJ4	F	173	184	Right-handed alpha
Helix 86	AJ5	F	218	229	Right-handed alpha
Helix 87	AJ6	F	239	249	Right-handed alpha
Helix 88	AJ7	F	258	262	Right-handed 310
Helix 89	AJ8	F	269	279	Right-handed alpha
Helix 90	AJ9	F	283	307	Right-handed alpha
Helix 91	AK1	G	2	9	Right-handed alpha
Helix 92	AK2	G	16	25	Right-handed alpha
Helix 93	AK3	G	42	58	Right-handed alpha
Helix 94	AK4	G	67	74	Right-handed alpha
Helix 95	AK5	G	78	96	Right-handed alpha
Helix 96	AK6	G	106	108	Right-handed 310
Helix 97	AK7	G	111	123	Right-handed alpha
Helix 98	AK8	G	126	134	Right-handed alpha
Helix 99	AK9	G	146	163	Right-handed alpha
Helix 100	AL1	G	173	184	Right-handed alpha
Helix 101	AL2	G	218	229	Right-handed alpha
Helix 102	AL3	G	239	249	Right-handed alpha
Helix 103	AL4	G	258	262	Right-handed 310
Helix 104	AL5	G	269	279	Right-handed alpha
Helix 105	AL6	G	283	307	Right-handed alpha
Helix 106	AL7	H	2	9	Right-handed alpha
Helix 107	AL8	H	16	25	Right-handed alpha
Helix 108	AL9	H	42	58	Right-handed alpha
Helix 109	AM1	H	67	74	Right-handed alpha
Helix 110	AM2	H	78	96	Right-handed alpha
Helix 111	AM3	H	106	108	Right-handed 310
Helix 112	AM4	H	111	123	Right-handed alpha
Helix 113	AM5	H	126	134	Right-handed alpha
Helix 114	AM6	H	146	163	Right-handed alpha
Helix 115	AM7	H	173	184	Right-handed alpha
Helix 116	AM8	H	218	229	Right-handed alpha
Helix 117	AM9	H	239	249	Right-handed alpha
Helix 118	AN1	H	258	262	Right-handed 310
Helix 119	AN2	H	269	279	Right-handed alpha
Helix 120	AN3	H	283	307	Right-handed alpha

There are 16 sheets in PDB entry 5N5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	166	170	parallel
Strand 4	A	29	35	parallel
Strand 5	A	60	66	parallel
Strand 6	A	101	104	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	265	267	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	166	170	parallel
Strand 4	B	29	35	parallel
Strand 5	B	60	66	parallel
Strand 6	B	101	104	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	265	267	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	166	170	parallel
Strand 4	C	29	35	parallel
Strand 5	C	60	66	parallel
Strand 6	C	101	104	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	255	first strand
Strand 2	C	265	267	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	189	193	anti-parallel
Strand 3	D	166	170	parallel
Strand 4	D	29	35	parallel
Strand 5	D	60	66	parallel
Strand 6	D	101	104	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	255	first strand
Strand 2	D	265	267	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	166	170	parallel
Strand 4	E	29	35	parallel
Strand 5	E	60	66	parallel
Strand 6	E	101	104	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	255	first strand
Strand 2	E	265	267	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	189	193	anti-parallel
Strand 3	F	166	170	parallel
Strand 4	F	29	35	parallel
Strand 5	F	60	66	parallel
Strand 6	F	101	104	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	255	first strand
Strand 2	F	265	267	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	166	170	parallel
Strand 4	G	29	35	parallel
Strand 5	G	60	66	parallel
Strand 6	G	101	104	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	253	255	first strand
Strand 2	G	265	267	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	189	193	anti-parallel
Strand 3	H	166	170	parallel
Strand 4	H	29	35	parallel
Strand 5	H	60	66	parallel
Strand 6	H	101	104	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	253	255	first strand
Strand 2	H	265	267	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N5V