Analysis of interatomic Contacts of Structural Units in PDB entry:
5N69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N69 entry

There are 4 chains in PDB entry 5N69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	TYR 128
A	TRP 130	SER 810
B	GLU 5	TYR 128
B	TRP 130	PHE 494

There are 90 helices in PDB entry 5N69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed 310
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	81	85	Right-handed 310
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	97	111	Right-handed alpha
Helix 7	AA7	A	135	143	Right-handed alpha
Helix 8	AA8	A	153	169	Right-handed alpha
Helix 9	AA9	A	183	200	Right-handed alpha
Helix 10	AB1	A	216	231	Right-handed alpha
Helix 11	AB2	A	269	274	Right-handed 310
Helix 12	AB3	A	283	291	Right-handed alpha
Helix 13	AB4	A	294	301	Right-handed alpha
Helix 14	AB5	A	306	314	Right-handed 310
Helix 15	AB6	A	324	339	Right-handed alpha
Helix 16	AB7	A	342	360	Right-handed alpha
Helix 17	AB8	A	378	389	Right-handed alpha
Helix 18	AB9	A	391	401	Right-handed alpha
Helix 19	AC1	A	416	448	Right-handed alpha
Helix 20	AC2	A	472	495	Right-handed alpha
Helix 21	AC3	A	495	504	Right-handed alpha
Helix 22	AC4	A	517	526	Right-handed alpha
Helix 23	AC5	A	529	538	Right-handed alpha
Helix 24	AC6	A	544	557	Right-handed alpha
Helix 25	AC7	A	592	599	Right-handed alpha
Helix 26	AC8	A	602	611	Right-handed alpha
Helix 27	AC9	A	614	621	Right-handed alpha
Helix 28	AD1	A	646	664	Right-handed alpha
Helix 29	AD2	A	685	697	Right-handed alpha
Helix 30	AD3	A	697	708	Right-handed alpha
Helix 31	AD4	A	715	723	Right-handed alpha
Helix 32	AD5	A	724	730	Right-handed 310
Helix 33	AD6	A	737	748	Right-handed alpha
Helix 34	AD7	A	752	754	Right-handed 310
Helix 35	AD8	A	766	809	Right-handed alpha
Helix 36	AD9	B	5	16	Right-handed 310
Helix 37	AE1	B	19	29	Right-handed alpha
Helix 38	AE2	B	74	76	Right-handed 310
Helix 39	AE3	B	81	85	Right-handed 310
Helix 40	AE4	B	89	93	Right-handed 310
Helix 41	AE5	B	97	111	Right-handed alpha
Helix 42	AE6	B	135	143	Right-handed alpha
Helix 43	AE7	B	153	169	Right-handed alpha
Helix 44	AE8	B	183	201	Right-handed alpha
Helix 45	AE9	B	216	231	Right-handed alpha
Helix 46	AF1	B	269	274	Right-handed 310
Helix 47	AF2	B	283	291	Right-handed alpha
Helix 48	AF3	B	294	301	Right-handed alpha
Helix 49	AF4	B	306	314	Right-handed 310
Helix 50	AF5	B	324	339	Right-handed alpha
Helix 51	AF6	B	342	360	Right-handed alpha
Helix 52	AF7	B	378	389	Right-handed alpha
Helix 53	AF8	B	391	401	Right-handed alpha
Helix 54	AF9	B	416	448	Right-handed alpha
Helix 55	AG1	B	472	495	Right-handed alpha
Helix 56	AG2	B	495	504	Right-handed alpha
Helix 57	AG3	B	517	526	Right-handed alpha
Helix 58	AG4	B	529	538	Right-handed alpha
Helix 59	AG5	B	544	557	Right-handed alpha
Helix 60	AG6	B	592	599	Right-handed alpha
Helix 61	AG7	B	602	611	Right-handed alpha
Helix 62	AG8	B	614	621	Right-handed alpha
Helix 63	AG9	B	646	664	Right-handed alpha
Helix 64	AH1	B	685	697	Right-handed alpha
Helix 65	AH2	B	697	708	Right-handed alpha
Helix 66	AH3	B	715	723	Right-handed alpha
Helix 67	AH4	B	724	730	Right-handed 310
Helix 68	AH5	B	738	748	Right-handed alpha
Helix 69	AH6	B	752	754	Right-handed 310
Helix 70	AH7	B	768	806	Right-handed alpha
Helix 71	AH8	G	42	46	Right-handed 310
Helix 72	AH9	G	51	63	Right-handed alpha
Helix 73	AI1	G	79	87	Right-handed alpha
Helix 74	AI2	G	92	100	Right-handed alpha
Helix 75	AI3	G	104	111	Right-handed alpha
Helix 76	AI4	G	115	128	Right-handed alpha
Helix 77	AI5	G	133	143	Right-handed alpha
Helix 78	AI6	G	154	164	Right-handed alpha
Helix 79	AI7	G	169	178	Right-handed alpha
Helix 80	AI8	G	188	199	Right-handed alpha
Helix 81	AI9	H	42	46	Right-handed 310
Helix 82	AJ1	H	51	65	Right-handed alpha
Helix 83	AJ2	H	79	87	Right-handed alpha
Helix 84	AJ3	H	92	100	Right-handed alpha
Helix 85	AJ4	H	104	111	Right-handed alpha
Helix 86	AJ5	H	114	128	Right-handed alpha
Helix 87	AJ6	H	133	143	Right-handed alpha
Helix 88	AJ7	H	154	164	Right-handed alpha
Helix 89	AJ8	H	169	178	Right-handed alpha
Helix 90	AJ9	H	190	199	Right-handed alpha

There are 17 sheets in PDB entry 5N69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	72	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	45	55	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	77	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	177	parallel
Strand 5	A	455	461	parallel
Strand 6	A	245	252	anti-parallel
Strand 7	A	258	266	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	584	588	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	758	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	45	53	anti-parallel
Strand 4	B	36	41	anti-parallel
Strand 5	B	77	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	177	parallel
Strand 5	B	455	461	parallel
Strand 6	B	245	252	anti-parallel
Strand 7	B	258	266	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	373	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	584	588	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	756	758	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	112	113	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	186	187	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N69

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N69