Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6A entry

There is 1 chain in PDB entry 5N6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10GLU 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 5N6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
A
97 110Right-handed alpha
Helix 3
AA3
A
135 143Right-handed alpha
Helix 4
AA4
A
153 168Right-handed alpha
Helix 5
AA5
A
183 197Right-handed alpha
Helix 6
AA6
A
218 224Right-handed alpha
Helix 7
AA7
A
225 227Right-handed 310
Helix 8
AA8
A
269 273Right-handed 310
Helix 9
AA9
A
283 292Right-handed alpha
Helix 10
AB1
A
324 339Right-handed alpha
Helix 11
AB2
A
342 360Right-handed alpha
Helix 12
AB3
A
382 387Right-handed alpha
Helix 13
AB4
A
392 401Right-handed alpha
Helix 14
AB5
A
416 448Right-handed alpha
Helix 15
AB6
A
472 494Right-handed alpha
Helix 16
AB7
A
495 505Right-handed alpha
Helix 17
AB8
A
517 525Right-handed alpha
Helix 18
AB9
A
529 540Right-handed alpha
Helix 19
AC1
A
544 557Right-handed alpha
Helix 20
AC2
A
593 598Right-handed alpha
Helix 21
AC3
A
602 611Right-handed alpha
Helix 22
AC4
A
614 623Right-handed alpha
Helix 23
AC5
A
646 663Right-handed alpha
Helix 24
AC6
A
685 690Right-handed alpha
Helix 25
AC7
A
691 697Right-handed alpha
Helix 26
AC8
A
766 775Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5N6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
46 54anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
666 673parallel
Strand 4
A
172 178parallel
Strand 5
A
456 461parallel
Strand 6
A
246 252anti-parallel
Strand 7
A
258 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
372 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
577 579anti-parallel
Strand 3
A
586 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 712first strand
Strand 2
A
764 765anti-parallel
Strand 3
A
756 757anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il