Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6H entry

There are 2 chains in PDB entry 5N6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6ARG 508
B
 ALA 2ARG 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 5N6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
25 28Right-handed 310
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
52 72Right-handed alpha
Helix 5
AA5
A
74 84Right-handed alpha
Helix 6
AA6
A
86 116Right-handed alpha
Helix 7
AA7
A
120 126Right-handed alpha
Helix 8
AA8
A
126 140Right-handed alpha
Helix 9
AA9
A
150 156Right-handed 310
Helix 10
AB1
A
158 162Right-handed 310
Helix 11
AB2
A
163 168Right-handed alpha
Helix 12
AB3
A
168 190Right-handed alpha
Helix 13
AB4
A
191 204Right-handed alpha
Helix 14
AB5
A
205 211Right-handed 310
Helix 15
AB6
A
217 221Right-handed 310
Helix 16
AB7
A
238 254Right-handed alpha
Helix 17
AB8
A
255 257Right-handed 310
Helix 18
AB9
A
277 292Right-handed alpha
Helix 19
AC1
A
347 351Right-handed 310
Helix 20
AC2
A
388 391Right-handed 310
Helix 21
AC3
A
392 400Right-handed alpha
Helix 22
AC4
A
420 437Right-handed alpha
Helix 23
AC5
A
481 487Right-handed alpha
Helix 24
AC6
A
488 508Right-handed alpha
Helix 25
AC7
B
3 9Right-handed alpha
Helix 26
AC8
B
9 24Right-handed alpha
Helix 27
AC9
B
25 28Right-handed 310
Helix 28
AD1
B
34 48Right-handed alpha
Helix 29
AD2
B
52 72Right-handed alpha
Helix 30
AD3
B
74 84Right-handed alpha
Helix 31
AD4
B
86 116Right-handed alpha
Helix 32
AD5
B
120 126Right-handed alpha
Helix 33
AD6
B
126 140Right-handed alpha
Helix 34
AD7
B
150 156Right-handed 310
Helix 35
AD8
B
158 162Right-handed 310
Helix 36
AD9
B
163 168Right-handed alpha
Helix 37
AE1
B
168 190Right-handed alpha
Helix 38
AE2
B
191 204Right-handed alpha
Helix 39
AE3
B
205 211Right-handed 310
Helix 40
AE4
B
217 221Right-handed 310
Helix 41
AE5
B
238 254Right-handed alpha
Helix 42
AE6
B
255 257Right-handed 310
Helix 43
AE7
B
277 292Right-handed alpha
Helix 44
AE8
B
388 391Right-handed 310
Helix 45
AE9
B
392 400Right-handed alpha
Helix 46
AF1
B
420 437Right-handed alpha
Helix 47
AF2
B
481 487Right-handed alpha
Helix 48
AF3
B
488 507Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5N6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
294 304parallel
Strand 3
A
310 320anti-parallel
Strand 4
A
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
294 304parallel
Strand 3
A
262 264parallel
Strand 4
A
222 228parallel
Strand 5
A
468 474anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 386anti-parallel
Strand 3
A
406 411parallel
Strand 4
A
440 444parallel
Strand 5
A
449 452anti-parallel
Strand 6
A
458 462anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
310 320anti-parallel
Strand 3
B
294 304anti-parallel
Strand 4
B
262 273parallel
Strand 5
B
222 228parallel
Strand 6
B
468 474anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
380 386anti-parallel
Strand 3
B
406 411parallel
Strand 4
B
440 444parallel
Strand 5
B
449 452anti-parallel
Strand 6
B
458 462anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il