Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6M entry

There is 1 chain in PDB entry 5N6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 3ARG 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5N6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
21 26Right-handed 310
Helix 3
AA3
A
32 46Right-handed alpha
Helix 4
AA4
A
50 70Right-handed alpha
Helix 5
AA5
A
71 81Right-handed alpha
Helix 6
AA6
A
84 100Right-handed alpha
Helix 7
AA7
A
100 114Right-handed alpha
Helix 8
AA8
A
121 139Right-handed alpha
Helix 9
AA9
A
149 155Right-handed 310
Helix 10
AB1
A
157 161Right-handed 310
Helix 11
AB2
A
162 185Right-handed alpha
Helix 12
AB3
A
186 188Right-handed 310
Helix 13
AB4
A
191 212Right-handed alpha
Helix 14
AB5
A
244 257Right-handed alpha
Helix 15
AB6
A
279 293Right-handed alpha
Helix 16
AB7
A
342 347Right-handed alpha
Helix 17
AB8
A
383 386Right-handed 310
Helix 18
AB9
A
387 396Right-handed alpha
Helix 19
AC1
A
414 431Right-handed alpha
Helix 20
AC2
A
475 480Right-handed alpha
Helix 21
AC3
A
482 503Right-handed alpha
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There are 3 sheets in PDB entry 5N6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
471 473anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
312 322anti-parallel
Strand 3
A
296 306anti-parallel
Strand 4
A
264 267parallel
Strand 5
A
225 230parallel
Strand 6
A
463 468anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
375 381anti-parallel
Strand 4
A
400 405parallel
Strand 5
A
434 438parallel
Strand 6
A
443 446anti-parallel
Strand 7
A
452 456anti-parallel
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