Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6N entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 5N6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ILE 84
A
 SER 86ALA 193
A
 HIS 195SER 235
B
 SER 4ILE 84
B
 SER 86ALA 193
B
 HIS 195THR 234
C
 ASP 27MET 59
C
 VAL 61GLY 82
C
 GLU 84LEU 353
C
 ARG 355LEU 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5N6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
20 34Right-handed alpha
Helix 3
AA3
A
39 73Right-handed alpha
Helix 4
AA4
A
77 109Right-handed alpha
Helix 5
AA5
A
109 114Right-handed alpha
Helix 6
AA6
A
116 138Right-handed alpha
Helix 7
AA7
A
139 165Right-handed alpha
Helix 8
AA8
A
169 186Right-handed alpha
Helix 9
AA9
A
189 204Right-handed alpha
Helix 10
AB1
A
207 211Right-handed 310
Helix 11
AB2
A
212 234Right-handed alpha
Helix 12
AB3
B
5 18Right-handed alpha
Helix 13
AB4
B
20 33Right-handed alpha
Helix 14
AB5
B
39 73Right-handed alpha
Helix 15
AB6
B
77 109Right-handed alpha
Helix 16
AB7
B
116 138Right-handed alpha
Helix 17
AB8
B
139 165Right-handed alpha
Helix 18
AB9
B
169 186Right-handed alpha
Helix 19
AC1
B
189 206Right-handed alpha
Helix 20
AC2
B
217 234Right-handed alpha
Helix 21
AC3
C
31 36Right-handed alpha
Helix 22
AC4
C
86 93Right-handed alpha
Helix 23
AC5
C
101 114Right-handed alpha
Helix 24
AC6
C
148 165Right-handed alpha
Helix 25
AC7
C
175 177Right-handed 310
Helix 26
AC8
C
180 192Right-handed alpha
Helix 27
AC9
C
192 197Right-handed alpha
Helix 28
AD1
C
205 211Right-handed alpha
Helix 29
AD2
C
217 221Right-handed 310
Helix 30
AD3
C
231 245Right-handed alpha
Helix 31
AD4
C
246 249Right-handed 310
Helix 32
AD5
C
260 267Right-handed alpha
Helix 33
AD6
C
308 321Right-handed alpha
Helix 34
AD7
C
323 342Right-handed alpha
Helix 35
AD8
C
349 353Right-handed 310
Helix 36
AD9
C
360 372Right-handed alpha
Helix 37
AE1
C
373 376Right-handed 310
Helix 38
AE2
C
377 398Right-handed alpha
Helix 39
AE3
C
430 434Right-handed 310
Helix 40
AE4
C
449 454Right-handed alpha
Helix 41
AE5
C
459 475Right-handed alpha
Helix 42
AE6
C
486 488Right-handed 310
Helix 43
AE7
C
492 514Right-handed alpha
Helix 44
AE8
C
528 547Right-handed alpha
Helix 45
AE9
C
570 573Right-handed 310
Helix 46
AF1
C
574 579Right-handed alpha
Helix 47
AF2
C
583 594Right-handed alpha
Helix 48
AF3
C
594 598Right-handed alpha
Helix 49
AF4
C
608 613Right-handed alpha
Helix 50
AF5
C
630 644Right-handed alpha
Helix 51
AF6
C
646 668Right-handed alpha
Helix 52
AF7
C
706 718Right-handed alpha
Helix 53
AF8
C
721 730Right-handed alpha
Helix 54
AF9
C
733 741Right-handed alpha
Helix 55
AG1
C
744 750Right-handed 310
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There are 10 sheets in PDB entry 5N6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
170 173anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
143 147anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 199first strand
Strand 2
C
296 297anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
251 254first strand
Strand 2
C
224 227parallel
Strand 3
C
273 274parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 282first strand
Strand 2
C
289 293anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
490 491first strand
Strand 2
C
558 559anti-parallel
Strand 3
C
564 565anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
518 519first strand
Strand 2
C
526 527anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
548 549first strand
Strand 2
C
554 555anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
599 600first strand
Strand 2
C
603 604anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
628 629first strand
Strand 2
C
676 677anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il