Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6P entry

There is 1 chain in PDB entry 5N6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4THR 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5N6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
48 63Right-handed alpha
Helix 3
AA3
A
75 87Right-handed alpha
Helix 4
AA4
A
111 122Right-handed alpha
Helix 5
AA5
A
133 150Right-handed alpha
Helix 6
AA6
A
167 179Right-handed alpha
Helix 7
AA7
A
191 206Right-handed alpha
Helix 8
AA8
A
208 211Right-handed 310
Helix 9
AA9
A
246 258Right-handed alpha
Helix 10
AB1
A
273 296Right-handed alpha
Helix 11
AB2
A
316 330Right-handed alpha
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There are 3 sheets in PDB entry 5N6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
6 13parallel
Strand 3
A
66 69parallel
Strand 4
A
89 92parallel
Strand 5
A
104 106parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
126 131parallel
Strand 3
A
185 189parallel
Strand 4
A
213 216parallel
Strand 5
A
235 240parallel
Strand 6
A
351 358anti-parallel
Strand 7
A
361 369anti-parallel
Strand 8
A
375 376anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
337 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il