Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6T entry

There are 2 chains in PDB entry 5N6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLU 445
B
 SER 1GLU 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 5N6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
33 40Right-handed alpha
Helix 4
AA4
A
45 49Right-handed 310
Helix 5
AA5
A
56 71Right-handed alpha
Helix 6
AA6
A
81 86Right-handed alpha
Helix 7
AA7
A
94 111Right-handed alpha
Helix 8
AA8
A
125 130Right-handed alpha
Helix 9
AA9
A
131 137Right-handed 310
Helix 10
AB1
A
138 155Right-handed alpha
Helix 11
AB2
A
166 176Right-handed alpha
Helix 12
AB3
A
186 212Right-handed alpha
Helix 13
AB4
A
234 247Right-handed alpha
Helix 14
AB5
A
248 258Right-handed alpha
Helix 15
AB6
A
261 269Right-handed alpha
Helix 16
AB7
A
270 272Right-handed 310
Helix 17
AB8
A
275 278Right-handed 310
Helix 18
AB9
A
279 284Right-handed alpha
Helix 19
AC1
A
328 343Right-handed alpha
Helix 20
AC2
A
368 388Right-handed alpha
Helix 21
AC3
A
405 412Right-handed 310
Helix 22
AC4
A
429 442Right-handed alpha
Helix 23
AC5
B
17 22Right-handed alpha
Helix 24
AC6
B
26 30Right-handed 310
Helix 25
AC7
B
33 40Right-handed alpha
Helix 26
AC8
B
45 49Right-handed 310
Helix 27
AC9
B
56 71Right-handed alpha
Helix 28
AD1
B
81 86Right-handed alpha
Helix 29
AD2
B
94 111Right-handed alpha
Helix 30
AD3
B
125 130Right-handed alpha
Helix 31
AD4
B
131 137Right-handed 310
Helix 32
AD5
B
138 155Right-handed alpha
Helix 33
AD6
B
166 176Right-handed alpha
Helix 34
AD7
B
186 210Right-handed alpha
Helix 35
AD8
B
232 247Right-handed alpha
Helix 36
AD9
B
248 258Right-handed alpha
Helix 37
AE1
B
261 269Right-handed alpha
Helix 38
AE2
B
275 278Right-handed 310
Helix 39
AE3
B
279 284Right-handed alpha
Helix 40
AE4
B
306 308Right-handed 310
Helix 41
AE5
B
328 343Right-handed alpha
Helix 42
AE6
B
368 388Right-handed alpha
Helix 43
AE7
B
405 412Right-handed 310
Helix 44
AE8
B
429 442Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5N6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
289 302anti-parallel
Strand 3
A
347 352parallel
Strand 4
A
392 398parallel
Strand 5
A
11 15parallel
Strand 6
A
75 79parallel
Strand 7
A
114 120parallel
Strand 8
A
160 165parallel
Strand 9
A
216 228parallel
Strand 10
A
289 302parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
425 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
75 79parallel
Strand 3
B
114 120parallel
Strand 4
B
160 165parallel
Strand 5
B
216 221parallel
Strand 6
B
289 293parallel
Strand 7
B
347 352parallel
Strand 8
B
392 398parallel
Strand 9
B
11 15parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
297 302parallel
Strand 3
B
310 313anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
425 428anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il