Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N6U entry

There are 4 chains in PDB entry 5N6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 811
B	MET 1	ILE 811
C	MET 1	ILE 811
D	MET 1	ILE 811

There are 91 helices in PDB entry 5N6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	36	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	51	57	Right-handed alpha
Helix 4	AA4	A	68	73	Right-handed alpha
Helix 5	AA5	A	128	139	Right-handed alpha
Helix 6	AA6	A	150	155	Right-handed 310
Helix 7	AA7	A	158	163	Right-handed 310
Helix 8	AA8	A	331	335	Right-handed 310
Helix 9	AA9	A	336	351	Right-handed alpha
Helix 10	AB1	A	365	375	Right-handed alpha
Helix 11	AB2	A	393	412	Right-handed alpha
Helix 12	AB3	A	425	432	Right-handed alpha
Helix 13	AB4	A	443	449	Right-handed alpha
Helix 14	AB5	A	449	459	Right-handed alpha
Helix 15	AB6	A	494	501	Right-handed 310
Helix 16	AB7	A	516	524	Right-handed alpha
Helix 17	AB8	A	534	540	Right-handed alpha
Helix 18	AB9	A	545	558	Right-handed alpha
Helix 19	AC1	A	563	590	Right-handed alpha
Helix 20	AC2	A	591	593	Right-handed 310
Helix 21	AC3	A	621	631	Right-handed alpha
Helix 22	AC4	A	725	729	Right-handed 310
Helix 23	AC5	A	796	800	Right-handed 310
Helix 24	AC6	B	28	36	Right-handed alpha
Helix 25	AC7	B	46	51	Right-handed alpha
Helix 26	AC8	B	51	57	Right-handed alpha
Helix 27	AC9	B	68	73	Right-handed alpha
Helix 28	AD1	B	128	139	Right-handed alpha
Helix 29	AD2	B	150	155	Right-handed 310
Helix 30	AD3	B	158	163	Right-handed 310
Helix 31	AD4	B	331	335	Right-handed 310
Helix 32	AD5	B	336	351	Right-handed alpha
Helix 33	AD6	B	365	376	Right-handed alpha
Helix 34	AD7	B	393	412	Right-handed alpha
Helix 35	AD8	B	425	432	Right-handed alpha
Helix 36	AD9	B	443	449	Right-handed alpha
Helix 37	AE1	B	449	459	Right-handed alpha
Helix 38	AE2	B	494	501	Right-handed 310
Helix 39	AE3	B	516	524	Right-handed alpha
Helix 40	AE4	B	534	540	Right-handed alpha
Helix 41	AE5	B	545	558	Right-handed alpha
Helix 42	AE6	B	563	590	Right-handed alpha
Helix 43	AE7	B	591	593	Right-handed 310
Helix 44	AE8	B	621	631	Right-handed alpha
Helix 45	AE9	B	725	729	Right-handed 310
Helix 46	AF1	B	796	800	Right-handed 310
Helix 47	AF2	C	28	36	Right-handed alpha
Helix 48	AF3	C	46	51	Right-handed alpha
Helix 49	AF4	C	51	57	Right-handed alpha
Helix 50	AF5	C	68	73	Right-handed alpha
Helix 51	AF6	C	128	139	Right-handed alpha
Helix 52	AF7	C	150	155	Right-handed 310
Helix 53	AF8	C	158	163	Right-handed 310
Helix 54	AF9	C	331	335	Right-handed 310
Helix 55	AG1	C	336	351	Right-handed alpha
Helix 56	AG2	C	365	376	Right-handed alpha
Helix 57	AG3	C	393	412	Right-handed alpha
Helix 58	AG4	C	425	432	Right-handed alpha
Helix 59	AG5	C	443	449	Right-handed alpha
Helix 60	AG6	C	449	459	Right-handed alpha
Helix 61	AG7	C	494	501	Right-handed 310
Helix 62	AG8	C	516	524	Right-handed alpha
Helix 63	AG9	C	534	540	Right-handed alpha
Helix 64	AH1	C	545	558	Right-handed alpha
Helix 65	AH2	C	563	590	Right-handed alpha
Helix 66	AH3	C	591	593	Right-handed 310
Helix 67	AH4	C	621	631	Right-handed alpha
Helix 68	AH5	C	725	729	Right-handed 310
Helix 69	AH6	C	792	800	Right-handed alpha
Helix 70	AH7	D	28	36	Right-handed alpha
Helix 71	AH8	D	46	51	Right-handed alpha
Helix 72	AH9	D	51	57	Right-handed alpha
Helix 73	AI1	D	68	73	Right-handed alpha
Helix 74	AI2	D	128	139	Right-handed alpha
Helix 75	AI3	D	150	155	Right-handed 310
Helix 76	AI4	D	158	163	Right-handed 310
Helix 77	AI5	D	331	335	Right-handed 310
Helix 78	AI6	D	336	351	Right-handed alpha
Helix 79	AI7	D	365	376	Right-handed alpha
Helix 80	AI8	D	393	412	Right-handed alpha
Helix 81	AI9	D	425	432	Right-handed alpha
Helix 82	AJ1	D	443	449	Right-handed alpha
Helix 83	AJ2	D	449	459	Right-handed alpha
Helix 84	AJ3	D	494	501	Right-handed 310
Helix 85	AJ4	D	516	524	Right-handed alpha
Helix 86	AJ5	D	534	540	Right-handed alpha
Helix 87	AJ6	D	545	558	Right-handed alpha
Helix 88	AJ7	D	563	589	Right-handed alpha
Helix 89	AJ8	D	621	631	Right-handed alpha
Helix 90	AJ9	D	725	729	Right-handed 310
Helix 91	AK1	D	792	798	Right-handed alpha

There are 49 sheets in PDB entry 5N6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	179	184	anti-parallel
Strand 3	A	76	81	anti-parallel
Strand 4	A	107	110	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	9	14	anti-parallel
Strand 3	A	59	67	anti-parallel
Strand 4	A	118	126	anti-parallel
Strand 5	A	88	92	anti-parallel
Strand 6	A	96	100	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	193	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	243	248	anti-parallel
Strand 4	C	243	253	anti-parallel
Strand 5	C	203	213	anti-parallel
Strand 6	C	187	193	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	193	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	243	248	anti-parallel
Strand 4	C	243	253	anti-parallel
Strand 5	C	203	213	anti-parallel
Strand 6	C	196	198	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	203	205	anti-parallel
Strand 3	A	251	253	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	291	first strand
Strand 2	A	270	277	anti-parallel
Strand 3	A	218	226	anti-parallel
Strand 4	A	232	239	anti-parallel
Strand 5	C	232	239	anti-parallel
Strand 6	C	218	226	anti-parallel
Strand 7	C	270	277	anti-parallel
Strand 8	C	284	291	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	310	313	anti-parallel
Strand 3	A	316	318	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	417	421	parallel
Strand 3	A	378	382	parallel
Strand 4	A	354	357	parallel
Strand 5	A	320	325	parallel
Strand 6	A	595	598	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	506	508	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	636	first strand
Strand 2	A	643	650	anti-parallel
Strand 3	A	639	640	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	636	first strand
Strand 2	A	643	650	anti-parallel
Strand 3	A	685	693	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	681	first strand
Strand 2	A	656	666	anti-parallel
Strand 3	A	702	710	anti-parallel
Strand 4	A	715	720	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	788	first strand
Strand 2	A	747	754	anti-parallel
Strand 3	A	736	742	anti-parallel
Strand 4	A	809	810	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	758	764	anti-parallel
Strand 3	A	801	803	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	179	184	anti-parallel
Strand 3	B	76	81	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	9	14	anti-parallel
Strand 3	B	59	67	anti-parallel
Strand 4	B	118	126	anti-parallel
Strand 5	B	88	92	anti-parallel
Strand 6	B	96	100	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	193	first strand
Strand 2	B	203	213	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	D	243	253	anti-parallel
Strand 5	D	203	213	anti-parallel
Strand 6	D	187	193	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	203	213	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	D	243	253	anti-parallel
Strand 5	D	203	213	anti-parallel
Strand 6	D	196	198	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	291	first strand
Strand 2	B	270	277	anti-parallel
Strand 3	B	218	226	anti-parallel
Strand 4	B	232	239	anti-parallel
Strand 5	D	232	239	anti-parallel
Strand 6	D	218	226	anti-parallel
Strand 7	D	270	277	anti-parallel
Strand 8	D	282	291	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	310	313	anti-parallel
Strand 3	B	316	318	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	417	421	parallel
Strand 3	B	378	382	parallel
Strand 4	B	354	357	parallel
Strand 5	B	320	325	parallel
Strand 6	B	595	598	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	506	508	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	636	first strand
Strand 2	B	643	650	anti-parallel
Strand 3	B	639	640	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	636	first strand
Strand 2	B	643	650	anti-parallel
Strand 3	B	685	693	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	666	first strand
Strand 2	B	702	710	anti-parallel
Strand 3	B	656	661	anti-parallel
Strand 4	B	678	681	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	666	first strand
Strand 2	B	702	710	anti-parallel
Strand 3	B	715	720	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	788	first strand
Strand 2	B	747	754	anti-parallel
Strand 3	B	734	742	anti-parallel
Strand 4	B	807	810	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	777	first strand
Strand 2	B	758	764	anti-parallel
Strand 3	B	801	803	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	179	184	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	107	110	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	9	14	anti-parallel
Strand 3	C	59	67	anti-parallel
Strand 4	C	118	126	anti-parallel
Strand 5	C	88	92	anti-parallel
Strand 6	C	96	100	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	310	313	anti-parallel
Strand 3	C	316	318	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	465	first strand
Strand 2	C	417	421	parallel
Strand 3	C	378	382	parallel
Strand 4	C	354	357	parallel
Strand 5	C	320	325	parallel
Strand 6	C	595	598	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	506	508	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	636	first strand
Strand 2	C	643	650	anti-parallel
Strand 3	C	639	640	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	636	first strand
Strand 2	C	643	650	anti-parallel
Strand 3	C	685	693	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	675	681	first strand
Strand 2	C	656	666	anti-parallel
Strand 3	C	702	710	anti-parallel
Strand 4	C	715	720	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	782	788	first strand
Strand 2	C	747	754	anti-parallel
Strand 3	C	736	742	anti-parallel
Strand 4	C	809	810	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	775	777	first strand
Strand 2	C	758	764	anti-parallel
Strand 3	C	801	803	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	179	184	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	107	110	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	59	67	anti-parallel
Strand 4	D	118	126	anti-parallel
Strand 5	D	88	92	anti-parallel
Strand 6	D	96	100	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	299	first strand
Strand 2	D	310	313	anti-parallel
Strand 3	D	316	318	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	465	first strand
Strand 2	D	417	421	parallel
Strand 3	D	378	382	parallel
Strand 4	D	354	357	parallel
Strand 5	D	320	325	parallel
Strand 6	D	595	598	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	506	508	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	636	first strand
Strand 2	D	643	650	anti-parallel
Strand 3	D	639	640	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	636	first strand
Strand 2	D	643	650	anti-parallel
Strand 3	D	685	693	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	664	666	first strand
Strand 2	D	702	710	anti-parallel
Strand 3	D	656	661	anti-parallel
Strand 4	D	675	681	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	664	666	first strand
Strand 2	D	702	710	anti-parallel
Strand 3	D	713	720	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	782	788	first strand
Strand 2	D	747	754	anti-parallel
Strand 3	D	736	742	anti-parallel
Strand 4	D	809	810	parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	D	758	764	anti-parallel
Strand 3	D	801	803	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6U