Analysis of interatomic Contacts of Structural Units in PDB entry:
5N6X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N6X entry

There are 2 chains in PDB entry 5N6X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23VAL 418
B
 PRO 23GLU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5N6X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
56 108Right-handed alpha
Helix 3
AA3
A
113 164Right-handed alpha
Helix 4
AA4
A
188 202Right-handed alpha
Helix 5
AA5
A
211 226Right-handed alpha
Helix 6
AA6
A
237 240Right-handed 310
Helix 7
AA7
A
241 253Right-handed alpha
Helix 8
AA8
A
257 269Right-handed alpha
Helix 9
AA9
A
296 306Right-handed alpha
Helix 10
AB1
A
313 334Right-handed alpha
Helix 11
AB2
A
336 341Right-handed 310
Helix 12
AB3
A
348 352Right-handed 310
Helix 13
AB4
A
353 360Right-handed alpha
Helix 14
AB5
A
360 368Right-handed alpha
Helix 15
AB6
A
371 375Right-handed 310
Helix 16
AB7
B
34 45Right-handed alpha
Helix 17
AB8
B
56 106Right-handed alpha
Helix 18
AB9
B
113 165Right-handed alpha
Helix 19
AC1
B
188 202Right-handed alpha
Helix 20
AC2
B
211 226Right-handed alpha
Helix 21
AC3
B
237 240Right-handed 310
Helix 22
AC4
B
241 253Right-handed alpha
Helix 23
AC5
B
257 269Right-handed alpha
Helix 24
AC6
B
296 306Right-handed alpha
Helix 25
AC7
B
313 334Right-handed alpha
Helix 26
AC8
B
336 341Right-handed 310
Helix 27
AC9
B
348 352Right-handed 310
Helix 28
AD1
B
353 360Right-handed alpha
Helix 29
AD2
B
360 368Right-handed alpha
Helix 30
AD3
B
371 375Right-handed 310
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There are 8 sheets in PDB entry 5N6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
206 209parallel
Strand 3
A
174 177parallel
Strand 4
A
25 28parallel
Strand 5
A
414 415anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
166 168anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
387 394parallel
Strand 4
A
383 384anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
387 394parallel
Strand 4
A
405 408parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
174 177parallel
Strand 3
B
206 209parallel
Strand 4
B
273 274parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
166 168anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 280first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
387 394parallel
Strand 4
B
383 384anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 280first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
387 394parallel
Strand 4
B
405 408parallel
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