Analysis of interatomic Contacts of Structural Units in PDB entry:
5N70


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N70 entry

There are 2 chains in PDB entry 5N70 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23ALA 361
B
 ALA 5ARG 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5N70. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
151 155Right-handed 310
Helix 5
AA5
A
161 169Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
258 270Right-handed alpha
Helix 8
AA8
A
304 308Right-handed alpha
Helix 9
AA9
A
337 342Right-handed alpha
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There are 5 sheets in PDB entry 5N70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 101first strand
Strand 2
A
104 117anti-parallel
Strand 3
A
120 133anti-parallel
Strand 4
A
64 67parallel
Strand 5
A
145 148anti-parallel
Strand 6
A
51 58parallel
Strand 7
A
41 46anti-parallel
Strand 8
A
104 117anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 212first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
192 196anti-parallel
Strand 6
B
6 9anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
334 336parallel
Strand 4
A
255 257anti-parallel
Strand 5
A
324 326parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
292 296anti-parallel
Strand 4
A
299 303anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
317 322anti-parallel
Strand 4
A
309 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il