Analysis of interatomic Contacts of Structural Units in PDB entry:
5N71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N71 entry

There is 1 chain in PDB entry 5N71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25ALA 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5N71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 78Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
135 140Right-handed alpha
Helix 4
AA4
A
151 155Right-handed 310
Helix 5
AA5
A
161 169Right-handed alpha
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
258 269Right-handed alpha
Helix 8
AA8
A
304 308Right-handed alpha
Helix 9
AA9
A
337 342Right-handed alpha
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There are 4 sheets in PDB entry 5N71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
105 117anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
28 35anti-parallel
Strand 5
A
192 196anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
344 349anti-parallel
Strand 8
A
354 359anti-parallel
Strand 9
A
209 215anti-parallel
Strand 10
A
220 223anti-parallel
Strand 11
A
244 248anti-parallel
Strand 12
A
334 336parallel
Strand 13
A
255 256anti-parallel
Strand 14
A
324 325parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
105 117anti-parallel
Strand 3
A
120 134anti-parallel
Strand 4
A
64 67parallel
Strand 5
A
145 148anti-parallel
Strand 6
A
51 58parallel
Strand 7
A
39 46anti-parallel
Strand 8
A
28 35anti-parallel
Strand 9
A
192 196anti-parallel
Strand 10
A
177 182anti-parallel
Strand 11
A
344 349anti-parallel
Strand 12
A
354 359anti-parallel
Strand 13
A
209 215anti-parallel
Strand 14
A
220 223anti-parallel
Strand 15
A
244 248anti-parallel
Strand 16
A
334 336parallel
Strand 17
A
255 256anti-parallel
Strand 18
A
324 325parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
292 296anti-parallel
Strand 4
A
299 303anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
319 322anti-parallel
Strand 4
A
309 312anti-parallel
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