Analysis of interatomic Contacts of Structural Units in PDB entry:
5N78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N78 entry

There are 5 chains in PDB entry 5N78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 257
B
 MET 1LYS 257
C
 MET 1LYS 257
D
 MET 1LYS 257
E
 MET 1PRO 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5N78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 46Right-handed alpha
Helix 2
AA2
A
52 57Right-handed 310
Helix 3
AA3
A
60 64Right-handed alpha
Helix 4
AA4
A
109 120Right-handed alpha
Helix 5
AA5
A
128 165Right-handed alpha
Helix 6
AA6
A
167 206Right-handed alpha
Helix 7
AA7
A
209 257Right-handed alpha
Helix 8
AA8
B
35 46Right-handed alpha
Helix 9
AA9
B
52 57Right-handed 310
Helix 10
AB1
B
60 64Right-handed alpha
Helix 11
AB2
B
109 120Right-handed alpha
Helix 12
AB3
B
128 164Right-handed alpha
Helix 13
AB4
B
169 206Right-handed alpha
Helix 14
AB5
B
209 257Right-handed alpha
Helix 15
AB6
C
35 46Right-handed alpha
Helix 16
AB7
C
52 57Right-handed 310
Helix 17
AB8
C
60 64Right-handed alpha
Helix 18
AB9
C
109 120Right-handed alpha
Helix 19
AC1
C
128 163Right-handed alpha
Helix 20
AC2
C
169 206Right-handed alpha
Helix 21
AC3
C
209 257Right-handed alpha
Helix 22
AC4
D
35 46Right-handed alpha
Helix 23
AC5
D
52 57Right-handed 310
Helix 24
AC6
D
60 64Right-handed alpha
Helix 25
AC7
D
109 120Right-handed alpha
Helix 26
AC8
D
128 165Right-handed alpha
Helix 27
AC9
D
167 206Right-handed alpha
Helix 28
AD1
D
209 257Right-handed alpha
Helix 29
AD2
E
35 46Right-handed alpha
Helix 30
AD3
E
52 57Right-handed 310
Helix 31
AD4
E
60 64Right-handed alpha
Helix 32
AD5
E
109 120Right-handed alpha
Helix 33
AD6
E
128 165Right-handed alpha
Helix 34
AD7
E
167 206Right-handed alpha
Helix 35
AD8
E
209 257Right-handed alpha
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There are 5 sheets in PDB entry 5N78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
28 32anti-parallel
Strand 4
A
100 105parallel
Strand 5
A
87 97anti-parallel
Strand 6
A
71 81anti-parallel
Strand 7
A
65 68anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
28 32anti-parallel
Strand 4
B
100 105parallel
Strand 5
B
87 97anti-parallel
Strand 6
B
71 81anti-parallel
Strand 7
B
65 68anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
28 32anti-parallel
Strand 4
C
100 105parallel
Strand 5
C
87 97anti-parallel
Strand 6
C
71 81anti-parallel
Strand 7
C
65 68anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
28 32anti-parallel
Strand 4
D
100 105parallel
Strand 5
D
87 97anti-parallel
Strand 6
D
71 81anti-parallel
Strand 7
D
65 68anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 14first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
28 32anti-parallel
Strand 4
E
100 105parallel
Strand 5
E
87 97anti-parallel
Strand 6
E
71 81anti-parallel
Strand 7
E
65 68anti-parallel
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