Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N7F entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5N7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 456ASP 878
B
 PHE 459ASP 878
C
 LEU 730PRO 731
C
 THR 733LEU 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5N7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
462 466Right-handed 310
Helix 2
AA2
A
505 511Right-handed alpha
Helix 3
AA3
A
531 541Right-handed alpha
Helix 4
AA4
A
573 587Right-handed alpha
Helix 5
AA5
A
591 600Right-handed alpha
Helix 6
AA6
A
603 619Right-handed alpha
Helix 7
AA7
A
621 630Right-handed alpha
Helix 8
AA8
A
631 643Right-handed alpha
Helix 9
AA9
A
644 657Right-handed alpha
Helix 10
AB1
A
663 674Right-handed alpha
Helix 11
AB2
A
675 691Right-handed alpha
Helix 12
AB3
A
693 702Right-handed alpha
Helix 13
AB4
A
703 715Right-handed alpha
Helix 14
AB5
A
726 740Right-handed alpha
Helix 15
AB6
A
748 759Right-handed alpha
Helix 16
AB7
A
760 775Right-handed alpha
Helix 17
AB8
A
778 787Right-handed alpha
Helix 18
AB9
A
788 804Right-handed alpha
Helix 19
AC1
A
804 818Right-handed alpha
Helix 20
AC2
A
823 835Right-handed alpha
Helix 21
AC3
A
838 851Right-handed alpha
Helix 22
AC4
A
853 862Right-handed alpha
Helix 23
AC5
A
863 875Right-handed alpha
Helix 24
AC6
B
533 541Right-handed alpha
Helix 25
AC7
B
573 587Right-handed alpha
Helix 26
AC8
B
591 600Right-handed alpha
Helix 27
AC9
B
603 619Right-handed alpha
Helix 28
AD1
B
621 628Right-handed alpha
Helix 29
AD2
B
631 642Right-handed alpha
Helix 30
AD3
B
644 657Right-handed alpha
Helix 31
AD4
B
663 674Right-handed alpha
Helix 32
AD5
B
675 691Right-handed alpha
Helix 33
AD6
B
693 702Right-handed alpha
Helix 34
AD7
B
704 715Right-handed alpha
Helix 35
AD8
B
726 741Right-handed alpha
Helix 36
AD9
B
748 759Right-handed alpha
Helix 37
AE1
B
760 775Right-handed alpha
Helix 38
AE2
B
778 787Right-handed alpha
Helix 39
AE3
B
788 804Right-handed alpha
Helix 40
AE4
B
804 819Right-handed alpha
Helix 41
AE5
B
823 835Right-handed alpha
Helix 42
AE6
B
838 851Right-handed alpha
Helix 43
AE7
B
853 862Right-handed alpha
Helix 44
AE8
B
863 875Right-handed alpha
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There are 4 sheets in PDB entry 5N7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 476first strand
Strand 2
A
547 554anti-parallel
Strand 3
A
518 522anti-parallel
Strand 4
A
525 526anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 501first strand
Strand 2
A
484 488anti-parallel
Strand 3
C
732 735anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 473first strand
Strand 2
B
550 554anti-parallel
Strand 3
B
518 522anti-parallel
Strand 4
B
525 526anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 488first strand
Strand 2
B
496 498anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il