Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N7J entry

There is 1 chain in PDB entry 5N7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5N7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
13 15Right-handed 310
Helix 3
AA3
A
16 26Right-handed alpha
Helix 4
AA4
A
26 52Right-handed alpha
Helix 5
AA5
A
56 75Right-handed alpha
Helix 6
AA6
A
76 88Right-handed alpha
Helix 7
AA7
A
89 95Right-handed 310
Helix 8
AA8
A
104 110Right-handed alpha
Helix 9
AA9
A
111 118Right-handed alpha
Helix 10
AB1
A
118 126Right-handed alpha
Helix 11
AB2
A
161 175Right-handed alpha
Helix 12
AB3
A
192 200Right-handed alpha
Helix 13
AB4
A
202 206Right-handed 310
Helix 14
AB5
A
215 223Right-handed alpha
Helix 15
AB6
A
261 278Right-handed alpha
Helix 16
AB7
A
287 291Right-handed 310
Helix 17
AB8
A
302 320Right-handed alpha
Helix 18
AB9
A
332 337Right-handed alpha
Helix 19
AC1
A
338 340Right-handed 310
Helix 20
AC2
A
350 364Right-handed alpha
Helix 21
AC3
A
366 376Right-handed alpha
Helix 22
AC4
A
400 407Right-handed alpha
Helix 23
AC5
A
410 422Right-handed alpha
Helix 24
AC6
A
450 456Right-handed alpha
Helix 25
AC7
A
457 460Right-handed 310
Helix 26
AC8
A
463 478Right-handed alpha
Helix 27
AC9
A
487 491Right-handed 310
Helix 28
AD1
A
495 501Right-handed 310
Helix 29
AD2
A
507 513Right-handed 310
Helix 30
AD3
A
517 523Right-handed alpha
Helix 31
AD4
A
529 548Right-handed alpha
Helix 32
AD5
A
549 552Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5N7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
129 132parallel
Strand 3
A
178 183parallel
Strand 4
A
282 285parallel
Strand 5
A
324 327parallel
Strand 6
A
347 349parallel
Strand 7
A
384 388parallel
Strand 8
A
481 485parallel
Strand 9
A
100 103parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
254 256anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
237 239anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
446 448anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
566 571anti-parallel
Strand 3
A
575 580anti-parallel
Strand 4
A
622 626anti-parallel
Strand 5
A
599 602anti-parallel
Strand 6
A
608 610anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
615 617anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il