Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N7N entry

There are 4 chains in PDB entry 5N7N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ALA 361
B	ALA 1	ALA 361
C	ALA 1	ALA 361
D	PHE 2	ALA 361

There are 36 helices in PDB entry 5N7N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	19	Right-handed alpha
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	151	155	Right-handed 310
Helix 5	AA5	A	161	169	Right-handed alpha
Helix 6	AA6	A	200	202	Right-handed 310
Helix 7	AA7	A	258	269	Right-handed alpha
Helix 8	AA8	A	304	308	Right-handed alpha
Helix 9	AA9	A	337	342	Right-handed alpha
Helix 10	AB1	B	11	19	Right-handed alpha
Helix 11	AB2	B	73	78	Right-handed alpha
Helix 12	AB3	B	83	87	Right-handed 310
Helix 13	AB4	B	151	155	Right-handed 310
Helix 14	AB5	B	161	169	Right-handed alpha
Helix 15	AB6	B	200	204	Right-handed 310
Helix 16	AB7	B	258	269	Right-handed alpha
Helix 17	AB8	B	304	308	Right-handed alpha
Helix 18	AB9	B	337	342	Right-handed alpha
Helix 19	AC1	C	11	19	Right-handed alpha
Helix 20	AC2	C	73	78	Right-handed alpha
Helix 21	AC3	C	83	87	Right-handed 310
Helix 22	AC4	C	151	155	Right-handed 310
Helix 23	AC5	C	161	169	Right-handed alpha
Helix 24	AC6	C	200	202	Right-handed 310
Helix 25	AC7	C	258	269	Right-handed alpha
Helix 26	AC8	C	304	308	Right-handed alpha
Helix 27	AC9	C	337	342	Right-handed alpha
Helix 28	AD1	D	11	19	Right-handed alpha
Helix 29	AD2	D	73	78	Right-handed alpha
Helix 30	AD3	D	83	87	Right-handed 310
Helix 31	AD4	D	151	155	Right-handed 310
Helix 32	AD5	D	161	169	Right-handed alpha
Helix 33	AD6	D	200	204	Right-handed 310
Helix 34	AD7	D	258	269	Right-handed alpha
Helix 35	AD8	D	304	308	Right-handed alpha
Helix 36	AD9	D	337	342	Right-handed alpha

There are 21 sheets in PDB entry 5N7N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	99	first strand
Strand 2	A	106	117	anti-parallel
Strand 3	A	40	46	anti-parallel
Strand 4	A	2	8	anti-parallel
Strand 5	A	192	196	anti-parallel
Strand 6	A	177	182	anti-parallel
Strand 7	A	344	349	anti-parallel
Strand 8	A	354	360	anti-parallel
Strand 9	A	204	212	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	99	first strand
Strand 2	A	106	117	anti-parallel
Strand 3	A	120	133	anti-parallel
Strand 4	A	64	67	parallel
Strand 5	A	145	148	anti-parallel
Strand 6	A	51	58	parallel
Strand 7	A	40	46	anti-parallel
Strand 8	A	2	8	anti-parallel
Strand 9	A	192	196	anti-parallel
Strand 10	A	177	182	anti-parallel
Strand 11	A	344	349	anti-parallel
Strand 12	A	354	360	anti-parallel
Strand 13	A	204	212	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	244	248	anti-parallel
Strand 3	A	334	336	parallel
Strand 4	A	255	257	anti-parallel
Strand 5	A	324	326	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	225	228	anti-parallel
Strand 3	A	292	296	anti-parallel
Strand 4	A	299	303	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	318	322	anti-parallel
Strand 4	A	309	313	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	99	first strand
Strand 2	B	106	117	anti-parallel
Strand 3	B	40	46	anti-parallel
Strand 4	B	2	8	anti-parallel
Strand 5	B	192	196	anti-parallel
Strand 6	B	177	182	anti-parallel
Strand 7	B	344	349	anti-parallel
Strand 8	B	354	359	anti-parallel
Strand 9	B	209	212	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	99	first strand
Strand 2	B	106	117	anti-parallel
Strand 3	B	120	133	anti-parallel
Strand 4	B	64	67	parallel
Strand 5	B	145	148	anti-parallel
Strand 6	B	51	58	parallel
Strand 7	B	40	46	anti-parallel
Strand 8	B	2	8	anti-parallel
Strand 9	B	192	196	anti-parallel
Strand 10	B	177	182	anti-parallel
Strand 11	B	344	349	anti-parallel
Strand 12	B	354	359	anti-parallel
Strand 13	B	209	212	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	244	248	anti-parallel
Strand 3	B	334	336	parallel
Strand 4	B	255	257	anti-parallel
Strand 5	B	324	326	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	225	228	anti-parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	299	303	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	279	281	anti-parallel
Strand 3	B	317	322	anti-parallel
Strand 4	B	309	314	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	99	first strand
Strand 2	C	106	117	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	2	8	anti-parallel
Strand 5	C	192	196	anti-parallel
Strand 6	C	177	182	anti-parallel
Strand 7	C	344	349	anti-parallel
Strand 8	C	354	360	anti-parallel
Strand 9	C	204	212	anti-parallel

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There are 13 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	99	first strand
Strand 2	C	106	117	anti-parallel
Strand 3	C	120	133	anti-parallel
Strand 4	C	64	67	parallel
Strand 5	C	145	148	anti-parallel
Strand 6	C	51	58	parallel
Strand 7	C	40	46	anti-parallel
Strand 8	C	2	8	anti-parallel
Strand 9	C	192	196	anti-parallel
Strand 10	C	177	182	anti-parallel
Strand 11	C	344	349	anti-parallel
Strand 12	C	354	360	anti-parallel
Strand 13	C	204	212	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	244	248	anti-parallel
Strand 3	C	334	336	parallel
Strand 4	C	255	257	anti-parallel
Strand 5	C	324	326	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	225	228	anti-parallel
Strand 3	C	292	296	anti-parallel
Strand 4	C	299	303	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	318	322	anti-parallel
Strand 4	C	309	313	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	99	first strand
Strand 2	D	106	117	anti-parallel
Strand 3	D	40	46	anti-parallel
Strand 4	D	3	8	anti-parallel
Strand 5	D	192	196	anti-parallel
Strand 6	D	177	182	anti-parallel
Strand 7	D	344	349	anti-parallel
Strand 8	D	354	359	anti-parallel
Strand 9	D	209	212	anti-parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	99	first strand
Strand 2	D	106	117	anti-parallel
Strand 3	D	120	133	anti-parallel
Strand 4	D	64	67	parallel
Strand 5	D	145	148	anti-parallel
Strand 6	D	51	58	parallel
Strand 7	D	40	46	anti-parallel
Strand 8	D	3	8	anti-parallel
Strand 9	D	192	196	anti-parallel
Strand 10	D	177	182	anti-parallel
Strand 11	D	344	349	anti-parallel
Strand 12	D	354	359	anti-parallel
Strand 13	D	209	212	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	244	248	anti-parallel
Strand 3	D	334	336	parallel
Strand 4	D	255	257	anti-parallel
Strand 5	D	324	326	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	225	228	anti-parallel
Strand 3	D	292	296	anti-parallel
Strand 4	D	299	303	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	279	280	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	314	first strand
Strand 2	D	317	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N7N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7N