Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N7Q entry

There are 6 chains in PDB entry 5N7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ALA 339
B	GLU 3	ALA 339
I	VAL 502	VAL 503
I	ALA 505	ALA 505
J	VAL 502	VAL 503
J	ALA 505	ALA 505

There are 20 helices in PDB entry 5N7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	113	118	Right-handed alpha
Helix 4	AA4	A	129	137	Right-handed 310
Helix 5	AA5	A	139	147	Right-handed alpha
Helix 6	AA6	A	178	182	Right-handed 310
Helix 7	AA7	A	236	248	Right-handed alpha
Helix 8	AA8	A	263	267	Right-handed 310
Helix 9	AA9	A	282	286	Right-handed alpha
Helix 10	AB1	A	315	320	Right-handed alpha
Helix 11	AB2	B	51	56	Right-handed alpha
Helix 12	AB3	B	61	65	Right-handed 310
Helix 13	AB4	B	113	118	Right-handed alpha
Helix 14	AB5	B	129	137	Right-handed 310
Helix 15	AB6	B	139	147	Right-handed alpha
Helix 16	AB7	B	178	182	Right-handed 310
Helix 17	AB8	B	236	248	Right-handed alpha
Helix 18	AB9	B	263	267	Right-handed 310
Helix 19	AC1	B	282	286	Right-handed alpha
Helix 20	AC2	B	315	320	Right-handed alpha

There are 9 sheets in PDB entry 5N7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	79	first strand
Strand 2	A	82	95	anti-parallel
Strand 3	A	17	24	anti-parallel
Strand 4	A	6	13	anti-parallel
Strand 5	A	170	174	anti-parallel
Strand 6	A	155	160	anti-parallel
Strand 7	A	322	327	anti-parallel
Strand 8	A	332	337	anti-parallel
Strand 9	A	187	190	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	79	first strand
Strand 2	A	82	95	anti-parallel
Strand 3	A	98	112	anti-parallel
Strand 4	A	42	45	parallel
Strand 5	A	123	126	anti-parallel
Strand 6	A	29	36	parallel
Strand 7	A	17	24	anti-parallel
Strand 8	A	6	13	anti-parallel
Strand 9	A	170	174	anti-parallel
Strand 10	A	155	160	anti-parallel
Strand 11	A	322	327	anti-parallel
Strand 12	A	332	337	anti-parallel
Strand 13	A	187	190	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	312	314	parallel
Strand 4	A	233	235	anti-parallel
Strand 5	A	302	304	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	203	206	anti-parallel
Strand 3	A	270	274	anti-parallel
Strand 4	A	277	281	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	287	292	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	79	first strand
Strand 2	B	82	95	anti-parallel
Strand 3	B	17	24	anti-parallel
Strand 4	B	6	13	anti-parallel
Strand 5	B	170	174	anti-parallel
Strand 6	B	155	160	anti-parallel
Strand 7	B	322	327	anti-parallel
Strand 8	B	332	337	anti-parallel
Strand 9	B	187	193	anti-parallel
Strand 10	B	198	201	anti-parallel
Strand 11	B	222	226	anti-parallel
Strand 12	B	312	314	parallel
Strand 13	B	233	235	anti-parallel
Strand 14	B	302	304	parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	79	first strand
Strand 2	B	82	95	anti-parallel
Strand 3	B	98	112	anti-parallel
Strand 4	B	42	45	parallel
Strand 5	B	123	126	anti-parallel
Strand 6	B	29	36	parallel
Strand 7	B	17	24	anti-parallel
Strand 8	B	6	13	anti-parallel
Strand 9	B	170	174	anti-parallel
Strand 10	B	155	160	anti-parallel
Strand 11	B	322	327	anti-parallel
Strand 12	B	332	337	anti-parallel
Strand 13	B	187	193	anti-parallel
Strand 14	B	198	201	anti-parallel
Strand 15	B	222	226	anti-parallel
Strand 16	B	312	314	parallel
Strand 17	B	233	235	anti-parallel
Strand 18	B	302	304	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	203	206	anti-parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	257	259	anti-parallel
Strand 3	B	295	300	anti-parallel
Strand 4	B	287	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N7Q