Analysis of interatomic Contacts of Structural Units in PDB entry:
5N89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N89 entry

There are 16 chains in PDB entry 5N89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14LYS 134
B
 GLU 14PRO 135
C
 GLY 1GLY 12
D
 GLU 14PRO 135
E
 GLY 1GLY 12
F
 GLU 14PRO 135
G
 GLY 1GLY 12
H
 GLU 14PRO 135
I
 GLY 1GLY 12
J
 GLY 1GLY 12
K
 GLY 16LYS 134
L
 ASN 2GLY 12
M
 GLU 14PRO 135
N
 GLY 1GLY 12
O
 ALA 15LYS 134
P
 GLY 1GLY 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5N89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
118 121Right-handed 310
Helix 3
AA3
B
49 51Right-handed 310
Helix 4
AA4
B
115 121Right-handed 310
Helix 5
AA5
C
2 12Right-handed alpha
Helix 6
AA6
D
49 51Right-handed 310
Helix 7
AA7
D
118 121Right-handed 310
Helix 8
AA8
E
2 12Right-handed alpha
Helix 9
AA9
F
49 51Right-handed 310
Helix 10
AB1
F
118 121Right-handed 310
Helix 11
AB2
G
2 11Right-handed alpha
Helix 12
AB3
H
49 51Right-handed 310
Helix 13
AB4
H
115 121Right-handed 310
Helix 14
AB5
I
2 12Right-handed alpha
Helix 15
AB6
J
2 11Right-handed alpha
Helix 16
AB7
K
49 51Right-handed 310
Helix 17
AB8
K
115 121Right-handed 310
Helix 18
AB9
L
3 12Right-handed alpha
Helix 19
AC1
M
49 51Right-handed 310
Helix 20
AC2
M
118 121Right-handed 310
Helix 21
AC3
N
2 11Right-handed alpha
Helix 22
AC4
O
49 51Right-handed 310
Helix 23
AC5
O
118 121Right-handed 310
Helix 24
AC6
P
2 12Right-handed alpha
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There are 8 sheets in PDB entry 5N89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
53 60anti-parallel
Strand 5
A
71 80anti-parallel
Strand 6
A
85 97anti-parallel
Strand 7
A
103 112anti-parallel
Strand 8
A
123 131anti-parallel
Strand 9
A
19 22anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
38 44anti-parallel
Strand 4
B
53 60anti-parallel
Strand 5
B
71 80anti-parallel
Strand 6
B
85 97anti-parallel
Strand 7
B
103 112anti-parallel
Strand 8
B
123 131anti-parallel
Strand 9
B
19 22anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
28 33anti-parallel
Strand 3
D
38 44anti-parallel
Strand 4
D
53 60anti-parallel
Strand 5
D
71 80anti-parallel
Strand 6
D
85 97anti-parallel
Strand 7
D
103 112anti-parallel
Strand 8
D
123 131anti-parallel
Strand 9
D
19 22anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 22first strand
Strand 2
F
28 33anti-parallel
Strand 3
F
38 44anti-parallel
Strand 4
F
53 60anti-parallel
Strand 5
F
71 80anti-parallel
Strand 6
F
85 97anti-parallel
Strand 7
F
103 112anti-parallel
Strand 8
F
123 131anti-parallel
Strand 9
F
19 22anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
19 22first strand
Strand 2
H
28 33anti-parallel
Strand 3
H
38 44anti-parallel
Strand 4
H
53 60anti-parallel
Strand 5
H
71 80anti-parallel
Strand 6
H
85 97anti-parallel
Strand 7
H
103 112anti-parallel
Strand 8
H
123 131anti-parallel
Strand 9
H
19 22anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
19 22first strand
Strand 2
K
28 33anti-parallel
Strand 3
K
38 44anti-parallel
Strand 4
K
53 60anti-parallel
Strand 5
K
71 80anti-parallel
Strand 6
K
85 97anti-parallel
Strand 7
K
103 112anti-parallel
Strand 8
K
123 131anti-parallel
Strand 9
K
19 22anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
19 22first strand
Strand 2
M
28 33anti-parallel
Strand 3
M
38 44anti-parallel
Strand 4
M
53 60anti-parallel
Strand 5
M
71 80anti-parallel
Strand 6
M
85 97anti-parallel
Strand 7
M
103 112anti-parallel
Strand 8
M
123 131anti-parallel
Strand 9
M
19 22anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
19 22first strand
Strand 2
O
28 33anti-parallel
Strand 3
O
38 44anti-parallel
Strand 4
O
53 60anti-parallel
Strand 5
O
71 80anti-parallel
Strand 6
O
85 97anti-parallel
Strand 7
O
103 112anti-parallel
Strand 8
O
123 130anti-parallel
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