Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N8B entry

There are 8 chains in PDB entry 5N8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15PRO 135
E
 ALA 1GLY 12
B
 GLY 16PRO 135
C
 ALA 1GLY 12
D
 ALA 15SER 139
F
 ALA 1GLY 12
G
 ALA 15PRO 135
H
 ALA 1GLY 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5N8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
115 121Right-handed 310
Helix 3
AA3
E
3 11Right-handed 310
Helix 4
AA4
B
49 53Right-handed 310
Helix 5
AA5
B
115 121Right-handed 310
Helix 6
AA6
C
3 11Right-handed 310
Helix 7
AA7
D
49 53Right-handed 310
Helix 8
AA8
D
115 121Right-handed 310
Helix 9
AA9
D
134 138Right-handed 310
Helix 10
AB1
F
3 11Right-handed 310
Helix 11
AB2
G
49 53Right-handed 310
Helix 12
AB3
G
115 121Right-handed 310
Helix 13
AB4
H
3 11Right-handed 310
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There are 4 sheets in PDB entry 5N8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
54 60anti-parallel
Strand 5
A
71 80anti-parallel
Strand 6
A
85 97anti-parallel
Strand 7
A
103 112anti-parallel
Strand 8
A
123 131anti-parallel
Strand 9
A
19 22anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
38 44anti-parallel
Strand 4
B
54 60anti-parallel
Strand 5
B
71 80anti-parallel
Strand 6
B
85 97anti-parallel
Strand 7
B
103 112anti-parallel
Strand 8
B
123 131anti-parallel
Strand 9
B
19 22anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
28 33anti-parallel
Strand 3
D
38 44anti-parallel
Strand 4
D
54 60anti-parallel
Strand 5
D
71 80anti-parallel
Strand 6
D
85 97anti-parallel
Strand 7
D
103 112anti-parallel
Strand 8
D
123 131anti-parallel
Strand 9
D
19 22anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
19 22first strand
Strand 2
G
28 33anti-parallel
Strand 3
G
38 44anti-parallel
Strand 4
G
54 60anti-parallel
Strand 5
G
71 80anti-parallel
Strand 6
G
85 97anti-parallel
Strand 7
G
103 112anti-parallel
Strand 8
G
123 131anti-parallel
Strand 9
G
19 22anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il