Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N8O entry

There are 2 chains in PDB entry 5N8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1473
C	T 5	T 22

There are 50 helices in PDB entry 5N8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	18	Right-handed alpha
Helix 2	AA2	A	35	41	Right-handed alpha
Helix 3	AA3	A	48	58	Right-handed alpha
Helix 4	AA4	A	87	96	Right-handed alpha
Helix 5	AA5	A	100	120	Right-handed alpha
Helix 6	AA6	A	185	192	Right-handed alpha
Helix 7	AA7	A	192	212	Right-handed alpha
Helix 8	AA8	A	269	282	Right-handed alpha
Helix 9	AA9	A	287	304	Right-handed alpha
Helix 10	AB1	A	316	328	Right-handed alpha
Helix 11	AB2	A	336	347	Right-handed alpha
Helix 12	AB3	A	353	354	Right-handed alpha
Helix 13	AB4	A	356	367	Right-handed alpha
Helix 14	AB5	A	383	402	Right-handed alpha
Helix 15	AB6	A	423	430	Right-handed alpha
Helix 16	AB7	A	443	460	Right-handed alpha
Helix 17	AB8	A	509	513	Right-handed 310
Helix 18	AB9	A	515	527	Right-handed alpha
Helix 19	AC1	A	547	552	Right-handed alpha
Helix 20	AC2	A	576	593	Right-handed alpha
Helix 21	AC3	A	604	621	Right-handed alpha
Helix 22	AC4	A	696	698	Right-handed 310
Helix 23	AC5	A	763	767	Right-handed 310
Helix 24	AC6	A	835	844	Right-handed alpha
Helix 25	AC7	A	848	858	Right-handed alpha
Helix 26	AC8	A	862	877	Right-handed alpha
Helix 27	AC9	A	885	894	Right-handed alpha
Helix 28	AD1	A	901	914	Right-handed alpha
Helix 29	AD2	A	936	952	Right-handed alpha
Helix 30	AD3	A	973	978	Right-handed alpha
Helix 31	AD4	A	999	1011	Right-handed alpha
Helix 32	AD5	A	1026	1036	Right-handed alpha
Helix 33	AD6	A	1043	1056	Right-handed alpha
Helix 34	AD7	A	1071	1075	Right-handed 310
Helix 35	AD8	A	1077	1086	Right-handed alpha
Helix 36	AD9	A	1112	1117	Right-handed alpha
Helix 37	AE1	A	1133	1135	Right-handed 310
Helix 38	AE2	A	1136	1146	Right-handed alpha
Helix 39	AE3	A	1147	1155	Right-handed alpha
Helix 40	AE4	A	1156	1158	Right-handed 310
Helix 41	AE5	A	1183	1195	Right-handed alpha
Helix 42	AE6	A	1209	1217	Right-handed alpha
Helix 43	AE7	A	1220	1224	Right-handed 310
Helix 44	AE8	A	1235	1251	Right-handed alpha
Helix 45	AE9	A	1271	1275	Right-handed 310
Helix 46	AF1	A	1276	1281	Right-handed alpha
Helix 47	AF2	A	1388	1392	Right-handed 310
Helix 48	AF3	A	1428	1436	Right-handed alpha
Helix 49	AF4	A	1451	1459	Right-handed alpha
Helix 50	AF5	A	1465	1469	Right-handed 310

There are 18 sheets in PDB entry 5N8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	80	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	73	74	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	130	135	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	532	536	parallel
Strand 3	A	434	437	parallel
Strand 4	A	557	559	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	813	814	parallel
Strand 3	A	787	790	parallel
Strand 4	A	597	600	parallel
Strand 5	A	775	776	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	A	710	712	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	660	first strand
Strand 2	A	665	670	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	680	682	anti-parallel
Strand 3	A	692	694	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	735	first strand
Strand 2	A	718	720	anti-parallel
Strand 3	A	770	772	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	757	758	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	987	989	first strand
Strand 2	A	1094	1096	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1040	1041	first strand
Strand 2	A	1021	1023	parallel
Strand 3	A	1067	1069	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1399	1401	first strand
Strand 2	A	1226	1230	parallel
Strand 3	A	1412	1414	parallel
Strand 4	A	1443	1444	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1260	1266	first strand
Strand 2	A	1331	1338	anti-parallel
Strand 3	A	1285	1286	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1296	1301	first strand
Strand 2	A	1306	1310	anti-parallel
Strand 3	A	1318	1319	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1361	1363	first strand
Strand 2	A	1344	1347	anti-parallel
Strand 3	A	1394	1395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1372	1374	first strand
Strand 2	A	1381	1383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8O