Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N8R entry

There are 2 chains in PDB entry 5N8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 52LEU 929
B
 LEU 54GLN 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 5N8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 77Right-handed alpha
Helix 2
AA2
A
91 103Right-handed alpha
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
145 152Right-handed alpha
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
158 169Right-handed alpha
Helix 9
AA9
A
181 197Right-handed alpha
Helix 10
AB1
A
199 202Right-handed 310
Helix 11
AB2
A
211 226Right-handed alpha
Helix 12
AB3
A
256 263Right-handed alpha
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
284 298Right-handed alpha
Helix 15
AB6
A
299 301Right-handed 310
Helix 16
AB7
A
315 322Right-handed alpha
Helix 17
AB8
A
341 350Right-handed alpha
Helix 18
AB9
A
371 383Right-handed alpha
Helix 19
AC1
A
388 396Right-handed alpha
Helix 20
AC2
A
397 401Right-handed 310
Helix 21
AC3
A
405 419Right-handed alpha
Helix 22
AC4
A
431 444Right-handed alpha
Helix 23
AC5
A
447 454Right-handed alpha
Helix 24
AC6
A
466 471Right-handed 310
Helix 25
AC7
A
472 476Right-handed 310
Helix 26
AC8
A
490 493Right-handed 310
Helix 27
AC9
A
530 540Right-handed alpha
Helix 28
AD1
A
554 561Right-handed alpha
Helix 29
AD2
A
567 572Right-handed 310
Helix 30
AD3
A
574 584Right-handed alpha
Helix 31
AD4
A
588 594Right-handed alpha
Helix 32
AD5
A
601 615Right-handed alpha
Helix 33
AD6
A
625 633Right-handed alpha
Helix 34
AD7
A
637 650Right-handed alpha
Helix 35
AD8
A
652 665Right-handed alpha
Helix 36
AD9
A
675 688Right-handed alpha
Helix 37
AE1
A
692 710Right-handed alpha
Helix 38
AE2
A
712 721Right-handed alpha
Helix 39
AE3
A
723 744Right-handed alpha
Helix 40
AE4
A
755 759Right-handed 310
Helix 41
AE5
A
763 776Right-handed alpha
Helix 42
AE6
A
845 853Right-handed alpha
Helix 43
AE7
A
878 902Right-handed alpha
Helix 44
AE8
A
910 925Right-handed alpha
Helix 45
AE9
B
61 77Right-handed alpha
Helix 46
AF1
B
91 103Right-handed alpha
Helix 47
AF2
B
104 116Right-handed alpha
Helix 48
AF3
B
117 121Right-handed 310
Helix 49
AF4
B
123 138Right-handed alpha
Helix 50
AF5
B
144 152Right-handed alpha
Helix 51
AF6
B
153 157Right-handed 310
Helix 52
AF7
B
158 169Right-handed alpha
Helix 53
AF8
B
181 197Right-handed alpha
Helix 54
AF9
B
199 202Right-handed 310
Helix 55
AG1
B
211 226Right-handed alpha
Helix 56
AG2
B
256 263Right-handed alpha
Helix 57
AG3
B
279 283Right-handed 310
Helix 58
AG4
B
284 298Right-handed alpha
Helix 59
AG5
B
299 301Right-handed 310
Helix 60
AG6
B
314 322Right-handed alpha
Helix 61
AG7
B
341 350Right-handed alpha
Helix 62
AG8
B
367 383Right-handed alpha
Helix 63
AG9
B
388 396Right-handed alpha
Helix 64
AH1
B
397 401Right-handed 310
Helix 65
AH2
B
405 420Right-handed alpha
Helix 66
AH3
B
431 444Right-handed alpha
Helix 67
AH4
B
447 455Right-handed alpha
Helix 68
AH5
B
466 471Right-handed 310
Helix 69
AH6
B
472 476Right-handed 310
Helix 70
AH7
B
490 493Right-handed 310
Helix 71
AH8
B
530 540Right-handed alpha
Helix 72
AH9
B
554 561Right-handed alpha
Helix 73
AI1
B
567 571Right-handed 310
Helix 74
AI2
B
574 584Right-handed alpha
Helix 75
AI3
B
588 595Right-handed alpha
Helix 76
AI4
B
601 615Right-handed alpha
Helix 77
AI5
B
625 633Right-handed alpha
Helix 78
AI6
B
637 650Right-handed alpha
Helix 79
AI7
B
652 665Right-handed alpha
Helix 80
AI8
B
675 688Right-handed alpha
Helix 81
AI9
B
692 710Right-handed alpha
Helix 82
AJ1
B
712 720Right-handed alpha
Helix 83
AJ2
B
723 744Right-handed alpha
Helix 84
AJ3
B
754 759Right-handed 310
Helix 85
AJ4
B
763 776Right-handed alpha
Helix 86
AJ5
B
845 853Right-handed alpha
Helix 87
AJ6
B
878 902Right-handed alpha
Helix 88
AJ7
B
910 925Right-handed alpha
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There are 10 sheets in PDB entry 5N8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
873 876parallel
Strand 3
A
865 869anti-parallel
Strand 4
A
858 860anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
250 255parallel
Strand 4
A
204 209parallel
Strand 5
A
274 277parallel
Strand 6
A
305 310parallel
Strand 7
A
171 176parallel
Strand 8
A
327 330parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
547 551parallel
Strand 3
A
501 506parallel
Strand 4
A
424 428parallel
Strand 5
A
483 488parallel
Strand 6
A
457 462parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 516first strand
Strand 2
A
521 528anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 832first strand
Strand 2
A
836 838anti-parallel
Strand 3
A
805 808parallel
Strand 4
A
798 800anti-parallel
Strand 5
A
779 782anti-parallel
Strand 6
A
824 826anti-parallel
Strand 7
A
842 844anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
873 876parallel
Strand 3
B
864 869anti-parallel
Strand 4
B
858 861anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
250 255parallel
Strand 4
B
204 209parallel
Strand 5
B
274 277parallel
Strand 6
B
305 310parallel
Strand 7
B
171 176parallel
Strand 8
B
327 330parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
547 551parallel
Strand 3
B
501 506parallel
Strand 4
B
424 428parallel
Strand 5
B
483 488parallel
Strand 6
B
457 462parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 516first strand
Strand 2
B
521 528anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
830 832first strand
Strand 2
B
836 838anti-parallel
Strand 3
B
805 808parallel
Strand 4
B
795 800anti-parallel
Strand 5
B
779 786anti-parallel
Strand 6
B
824 826anti-parallel
Strand 7
B
842 844anti-parallel
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