Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N8S entry

There are 2 chains in PDB entry 5N8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 52LEU 929
B
 ILE 52SER 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 5N8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 76Right-handed alpha
Helix 2
AA2
A
92 103Right-handed alpha
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
144 150Right-handed alpha
Helix 7
AA7
A
153 157Right-handed 310
Helix 8
AA8
A
158 169Right-handed alpha
Helix 9
AA9
A
181 197Right-handed alpha
Helix 10
AB1
A
199 202Right-handed 310
Helix 11
AB2
A
211 226Right-handed alpha
Helix 12
AB3
A
256 264Right-handed alpha
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
284 298Right-handed alpha
Helix 15
AB6
A
299 301Right-handed 310
Helix 16
AB7
A
315 322Right-handed alpha
Helix 17
AB8
A
341 350Right-handed alpha
Helix 18
AB9
A
369 381Right-handed alpha
Helix 19
AC1
A
388 394Right-handed alpha
Helix 20
AC2
A
405 419Right-handed alpha
Helix 21
AC3
A
431 444Right-handed alpha
Helix 22
AC4
A
447 454Right-handed alpha
Helix 23
AC5
A
466 470Right-handed 310
Helix 24
AC6
A
490 493Right-handed 310
Helix 25
AC7
A
530 541Right-handed alpha
Helix 26
AC8
A
554 561Right-handed alpha
Helix 27
AC9
A
567 572Right-handed alpha
Helix 28
AD1
A
574 584Right-handed alpha
Helix 29
AD2
A
588 594Right-handed alpha
Helix 30
AD3
A
601 615Right-handed alpha
Helix 31
AD4
A
625 634Right-handed alpha
Helix 32
AD5
A
637 650Right-handed alpha
Helix 33
AD6
A
652 665Right-handed alpha
Helix 34
AD7
A
679 688Right-handed alpha
Helix 35
AD8
A
692 710Right-handed alpha
Helix 36
AD9
A
712 720Right-handed alpha
Helix 37
AE1
A
723 744Right-handed alpha
Helix 38
AE2
A
755 759Right-handed 310
Helix 39
AE3
A
763 776Right-handed alpha
Helix 40
AE4
A
845 853Right-handed alpha
Helix 41
AE5
A
878 902Right-handed alpha
Helix 42
AE6
A
911 925Right-handed alpha
Helix 43
AE7
B
61 76Right-handed alpha
Helix 44
AE8
B
92 103Right-handed alpha
Helix 45
AE9
B
104 116Right-handed alpha
Helix 46
AF1
B
117 121Right-handed 310
Helix 47
AF2
B
123 133Right-handed alpha
Helix 48
AF3
B
145 152Right-handed alpha
Helix 49
AF4
B
153 157Right-handed 310
Helix 50
AF5
B
158 169Right-handed alpha
Helix 51
AF6
B
181 197Right-handed alpha
Helix 52
AF7
B
199 202Right-handed 310
Helix 53
AF8
B
211 226Right-handed alpha
Helix 54
AF9
B
256 266Right-handed alpha
Helix 55
AG1
B
279 283Right-handed 310
Helix 56
AG2
B
284 298Right-handed alpha
Helix 57
AG3
B
299 301Right-handed 310
Helix 58
AG4
B
314 322Right-handed alpha
Helix 59
AG5
B
341 349Right-handed alpha
Helix 60
AG6
B
368 381Right-handed alpha
Helix 61
AG7
B
388 393Right-handed alpha
Helix 62
AG8
B
405 419Right-handed alpha
Helix 63
AG9
B
431 444Right-handed alpha
Helix 64
AH1
B
447 454Right-handed alpha
Helix 65
AH2
B
466 471Right-handed 310
Helix 66
AH3
B
472 476Right-handed 310
Helix 67
AH4
B
490 493Right-handed 310
Helix 68
AH5
B
530 541Right-handed alpha
Helix 69
AH6
B
554 559Right-handed alpha
Helix 70
AH7
B
567 571Right-handed 310
Helix 71
AH8
B
574 584Right-handed alpha
Helix 72
AH9
B
588 594Right-handed alpha
Helix 73
AI1
B
601 615Right-handed alpha
Helix 74
AI2
B
625 634Right-handed alpha
Helix 75
AI3
B
637 650Right-handed alpha
Helix 76
AI4
B
652 665Right-handed alpha
Helix 77
AI5
B
675 688Right-handed alpha
Helix 78
AI6
B
692 710Right-handed alpha
Helix 79
AI7
B
712 720Right-handed alpha
Helix 80
AI8
B
723 744Right-handed alpha
Helix 81
AI9
B
754 758Right-handed 310
Helix 82
AJ1
B
763 776Right-handed alpha
Helix 83
AJ2
B
845 853Right-handed alpha
Helix 84
AJ3
B
878 902Right-handed alpha
Helix 85
AJ4
B
910 925Right-handed alpha
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There are 8 sheets in PDB entry 5N8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
250 255parallel
Strand 4
A
204 209parallel
Strand 5
A
274 277parallel
Strand 6
A
305 310parallel
Strand 7
A
171 176parallel
Strand 8
A
327 330parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
547 551parallel
Strand 3
A
501 506parallel
Strand 4
A
424 428parallel
Strand 5
A
483 488parallel
Strand 6
A
457 462parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 516first strand
Strand 2
A
521 528anti-parallel
Strand 3
A
830 832parallel
Strand 4
A
837 838anti-parallel
Strand 5
A
805 808parallel
Strand 6
A
798 800anti-parallel
Strand 7
A
779 782anti-parallel
Strand 8
A
824 826anti-parallel
Strand 9
A
842 844anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 860first strand
Strand 2
A
865 869anti-parallel
Strand 3
A
873 876anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
250 255parallel
Strand 4
B
204 209parallel
Strand 5
B
274 277parallel
Strand 6
B
305 310parallel
Strand 7
B
171 176parallel
Strand 8
B
327 330parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
547 551parallel
Strand 3
B
501 506parallel
Strand 4
B
424 428parallel
Strand 5
B
483 488parallel
Strand 6
B
457 462parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 513first strand
Strand 2
B
522 528anti-parallel
Strand 3
B
830 832parallel
Strand 4
B
836 838anti-parallel
Strand 5
B
805 808parallel
Strand 6
B
798 800anti-parallel
Strand 7
B
779 782anti-parallel
Strand 8
B
824 826anti-parallel
Strand 9
B
842 844anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
858 860first strand
Strand 2
B
865 869anti-parallel
Strand 3
B
873 876anti-parallel
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