Analysis of interatomic Contacts of Structural Units in PDB entry:
5N8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N8Y entry

There are 24 chains in PDB entry 5N8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 14ARG 496
B
GLU 14ARG 496
C
GLU 14ARG 496
D
GLU 14ARG 496
E
GLU 14ARG 496
F
GLU 14ARG 496
G
THR 6ASP 98
H
THR 6ASP 98
K
THR 6ASP 98
J
THR 6ASP 98
I
THR 6ASP 98
L
THR 6ASP 98
M
ASP 174ARG 282
N
ASP 174ILE 280
O
ASP 174ARG 282
P
ASP 174ILE 280
Q
ASP 174ARG 282
R
ASP 174ILE 280
S
ASP 174ARG 282
T
ASP 174ILE 280
U
ASP 174ARG 282
V
ASP 174ILE 280
W
ASP 174ILE 280
X
ASP 174ARG 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are180 helices in PDB entry 5N8Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
51 68Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
121 137Right-handed alpha
Helix 7
AA7
A
146 154Right-handed alpha
Helix 8
AA8
A
157 175Right-handed alpha
Helix 9
AA9
A
192 199Right-handed 310
Helix 10
AB1
A
267 274Right-handed alpha
Helix 11
AB2
A
293 308Right-handed alpha
Helix 12
AB3
A
320 332Right-handed alpha
Helix 13
AB4
A
335 341Right-handed alpha
Helix 14
AB5
A
355 371Right-handed alpha
Helix 15
AB6
A
379 384Right-handed alpha
Helix 16
AB7
A
388 406Right-handed alpha
Helix 17
AB8
B
27 32Right-handed alpha
Helix 18
AB9
B
51 68Right-handed alpha
Helix 19
AC1
B
79 88Right-handed alpha
Helix 20
AC2
B
89 91Right-handed 310
Helix 21
AC3
B
93 100Right-handed alpha
Helix 22
AC4
B
121 137Right-handed alpha
Helix 23
AC5
B
146 154Right-handed alpha
Helix 24
AC6
B
157 175Right-handed alpha
Helix 25
AC7
B
192 199Right-handed 310
Helix 26
AC8
B
267 274Right-handed alpha
Helix 27
AC9
B
293 308Right-handed alpha
Helix 28
AD1
B
320 332Right-handed alpha
Helix 29
AD2
B
335 341Right-handed alpha
Helix 30
AD3
B
355 371Right-handed alpha
Helix 31
AD4
B
379 384Right-handed alpha
Helix 32
AD5
B
388 406Right-handed alpha
Helix 33
AD6
C
27 32Right-handed alpha
Helix 34
AD7
C
51 68Right-handed alpha
Helix 35
AD8
C
79 88Right-handed alpha
Helix 36
AD9
C
89 91Right-handed 310
Helix 37
AE1
C
93 100Right-handed alpha
Helix 38
AE2
C
121 137Right-handed alpha
Helix 39
AE3
C
146 154Right-handed alpha
Helix 40
AE4
C
157 175Right-handed alpha
Helix 41
AE5
C
192 199Right-handed 310
Helix 42
AE6
C
267 274Right-handed alpha
Helix 43
AE7
C
293 308Right-handed alpha
Helix 44
AE8
C
320 332Right-handed alpha
Helix 45
AE9
C
335 341Right-handed alpha
Helix 46
AF1
C
355 371Right-handed alpha
Helix 47
AF2
C
379 384Right-handed alpha
Helix 48
AF3
C
388 406Right-handed alpha
Helix 49
AF4
D
27 32Right-handed alpha
Helix 50
AF5
D
51 68Right-handed alpha
Helix 51
AF6
D
79 88Right-handed alpha
Helix 52
AF7
D
89 91Right-handed 310
Helix 53
AF8
D
93 100Right-handed alpha
Helix 54
AF9
D
121 137Right-handed alpha
Helix 55
AG1
D
146 154Right-handed alpha
Helix 56
AG2
D
157 175Right-handed alpha
Helix 57
AG3
D
192 199Right-handed 310
Helix 58
AG4
D
267 274Right-handed alpha
Helix 59
AG5
D
293 308Right-handed alpha
Helix 60
AG6
D
320 332Right-handed alpha
Helix 61
AG7
D
335 341Right-handed alpha
Helix 62
AG8
D
355 371Right-handed alpha
Helix 63
AG9
D
379 384Right-handed alpha
Helix 64
AH1
D
388 406Right-handed alpha
Helix 65
AH2
E
27 32Right-handed alpha
Helix 66
AH3
E
51 68Right-handed alpha
Helix 67
AH4
E
79 88Right-handed alpha
Helix 68
AH5
E
89 91Right-handed 310
Helix 69
AH6
E
93 100Right-handed alpha
Helix 70
AH7
E
121 137Right-handed alpha
Helix 71
AH8
E
146 154Right-handed alpha
Helix 72
AH9
E
157 175Right-handed alpha
Helix 73
AI1
E
192 199Right-handed 310
Helix 74
AI2
E
267 274Right-handed alpha
Helix 75
AI3
E
293 308Right-handed alpha
Helix 76
AI4
E
320 332Right-handed alpha
Helix 77
AI5
E
335 341Right-handed alpha
Helix 78
AI6
E
355 371Right-handed alpha
Helix 79
AI7
E
379 384Right-handed alpha
Helix 80
AI8
E
388 406Right-handed alpha
Helix 81
AI9
F
27 32Right-handed alpha
Helix 82
AJ1
F
51 68Right-handed alpha
Helix 83
AJ2
F
79 88Right-handed alpha
Helix 84
AJ3
F
89 91Right-handed 310
Helix 85
AJ4
F
93 100Right-handed alpha
Helix 86
AJ5
F
121 137Right-handed alpha
Helix 87
AJ6
F
146 154Right-handed alpha
Helix 88
AJ7
F
157 175Right-handed alpha
Helix 89
AJ8
F
192 199Right-handed 310
Helix 90
AJ9
F
267 274Right-handed alpha
Helix 91
AK1
F
293 308Right-handed alpha
Helix 92
AK2
F
320 332Right-handed alpha
Helix 93
AK3
F
335 341Right-handed alpha
Helix 94
AK4
F
355 371Right-handed alpha
Helix 95
AK5
F
379 384Right-handed alpha
Helix 96
AK6
F
388 406Right-handed alpha
Helix 97
AK7
G
17 34Right-handed alpha
Helix 98
AK8
G
49 56Right-handed alpha
Helix 99
AK9
G
81 98Right-handed alpha
Helix 100
AL1
H
17 34Right-handed alpha
Helix 101
AL2
H
49 56Right-handed alpha
Helix 102
AL3
H
81 98Right-handed alpha
Helix 103
AL4
K
17 34Right-handed alpha
Helix 104
AL5
K
49 56Right-handed alpha
Helix 105
AL6
K
81 98Right-handed alpha
Helix 106
AL7
J
17 34Right-handed alpha
Helix 107
AL8
J
49 56Right-handed alpha
Helix 108
AL9
J
81 98Right-handed alpha
Helix 109
AM1
I
17 34Right-handed alpha
Helix 110
AM2
I
49 56Right-handed alpha
Helix 111
AM3
I
81 98Right-handed alpha
Helix 112
AM4
L
17 34Right-handed alpha
Helix 113
AM5
L
49 56Right-handed alpha
Helix 114
AM6
L
81 98Right-handed alpha
Helix 115
AM7
M
183 206Right-handed alpha
Helix 116
AM8
M
211 226Right-handed alpha
Helix 117
AM9
M
229 250Right-handed alpha
Helix 118
AN1
M
256 260Right-handed 310
Helix 119
AN2
M
261 280Right-handed alpha
Helix 120
AN3
N
174 182Right-handed 310
Helix 121
AN4
N
183 206Right-handed alpha
Helix 122
AN5
N
211 226Right-handed alpha
Helix 123
AN6
N
229 251Right-handed alpha
Helix 124
AN7
N
254 260Right-handed 310
Helix 125
AN8
N
261 279Right-handed alpha
Helix 126
AN9
O
183 206Right-handed alpha
Helix 127
AO1
O
211 226Right-handed alpha
Helix 128
AO2
O
229 250Right-handed alpha
Helix 129
AO3
O
256 260Right-handed 310
Helix 130
AO4
O
261 280Right-handed alpha
Helix 131
AO5
P
174 182Right-handed 310
Helix 132
AO6
P
183 206Right-handed alpha
Helix 133
AO7
P
211 226Right-handed alpha
Helix 134
AO8
P
229 251Right-handed alpha
Helix 135
AO9
P
254 260Right-handed 310
Helix 136
AP1
P
261 279Right-handed alpha
Helix 137
AP2
Q
183 206Right-handed alpha
Helix 138
AP3
Q
211 226Right-handed alpha
Helix 139
AP4
Q
229 250Right-handed alpha
Helix 140
AP5
Q
256 260Right-handed 310
Helix 141
AP6
Q
261 280Right-handed alpha
Helix 142
AP7
R
174 182Right-handed 310
Helix 143
AP8
R
183 206Right-handed alpha
Helix 144
AP9
R
211 226Right-handed alpha
Helix 145
AQ1
R
229 251Right-handed alpha
Helix 146
AQ2
R
254 260Right-handed 310
Helix 147
AQ3
R
261 279Right-handed alpha
Helix 148
AQ4
S
183 206Right-handed alpha
Helix 149
AQ5
S
211 226Right-handed alpha
Helix 150
AQ6
S
229 250Right-handed alpha
Helix 151
AQ7
S
256 260Right-handed 310
Helix 152
AQ8
S
261 280Right-handed alpha
Helix 153
AQ9
T
174 182Right-handed 310
Helix 154
AR1
T
183 206Right-handed alpha
Helix 155
AR2
T
211 226Right-handed alpha
Helix 156
AR3
T
229 251Right-handed alpha
Helix 157
AR4
T
254 260Right-handed 310
Helix 158
AR5
T
261 279Right-handed alpha
Helix 159
AR6
U
183 206Right-handed alpha
Helix 160
AR7
U
211 226Right-handed alpha
Helix 161
AR8
U
229 250Right-handed alpha
Helix 162
AR9
U
256 260Right-handed 310
Helix 163
AS1
U
261 280Right-handed alpha
Helix 164
AS2
V
174 182Right-handed 310
Helix 165
AS3
V
183 206Right-handed alpha
Helix 166
AS4
V
211 226Right-handed alpha
Helix 167
AS5
V
229 251Right-handed alpha
Helix 168
AS6
V
254 260Right-handed 310
Helix 169
AS7
V
261 279Right-handed alpha
Helix 170
AS8
W
183 206Right-handed alpha
Helix 171
AS9
W
211 226Right-handed alpha
Helix 172
AT1
W
229 250Right-handed alpha
Helix 173
AT2
W
256 260Right-handed 310
Helix 174
AT3
W
261 280Right-handed alpha
Helix 175
AT4
X
174 182Right-handed 310
Helix 176
AT5
X
183 206Right-handed alpha
Helix 177
AT6
X
211 226Right-handed alpha
Helix 178
AT7
X
229 251Right-handed alpha
Helix 179
AT8
X
254 260Right-handed 310
Helix 180
AT9
X
261 279Right-handed alpha
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There are 30 sheets in PDB entry 5N8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 21first strand
Strand 2
A
36 37anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 107first strand
Strand 2
A
71 75parallel
Strand 3
A
141 145parallel
Strand 4
A
177 183parallel
Strand 5
A
41 46parallel
Strand 6
A
203 212parallel
Strand 7
A
215 225anti-parallel
Strand 8
A
234 240anti-parallel
Strand 9
A
243 246anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 263first strand
Strand 2
A
278 279anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
374 376first strand
Strand 2
A
409 413parallel
Strand 3
A
283 288parallel
Strand 4
A
436 442parallel
Strand 5
A
451 458anti-parallel
Strand 6
A
468 473anti-parallel
Strand 7
A
476 482anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
36 37anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 107first strand
Strand 2
B
71 75parallel
Strand 3
B
141 145parallel
Strand 4
B
177 183parallel
Strand 5
B
41 46parallel
Strand 6
B
203 212parallel
Strand 7
B
215 225anti-parallel
Strand 8
B
234 240anti-parallel
Strand 9
B
243 246anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 263first strand
Strand 2
B
278 279anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
374 376first strand
Strand 2
B
409 413parallel
Strand 3
B
283 288parallel
Strand 4
B
436 442parallel
Strand 5
B
451 458anti-parallel
Strand 6
B
468 473anti-parallel
Strand 7
B
476 482anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
20 21first strand
Strand 2
C
36 37anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
103 107first strand
Strand 2
C
71 75parallel
Strand 3
C
141 145parallel
Strand 4
C
177 183parallel
Strand 5
C
41 46parallel
Strand 6
C
203 212parallel
Strand 7
C
215 225anti-parallel
Strand 8
C
234 240anti-parallel
Strand 9
C
243 246anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
262 263first strand
Strand 2
C
278 279anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
374 376first strand
Strand 2
C
409 413parallel
Strand 3
C
283 288parallel
Strand 4
C
436 442parallel
Strand 5
C
451 458anti-parallel
Strand 6
C
468 473anti-parallel
Strand 7
C
476 482anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
36 37anti-parallel
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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
103 107first strand
Strand 2
D
71 75parallel
Strand 3
D
141 145parallel
Strand 4
D
177 183parallel
Strand 5
D
41 46parallel
Strand 6
D
203 212parallel
Strand 7
D
215 225anti-parallel
Strand 8
D
234 240anti-parallel
Strand 9
D
243 246anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
262 263first strand
Strand 2
D
278 279anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
374 376first strand
Strand 2
D
409 413parallel
Strand 3
D
283 288parallel
Strand 4
D
436 442parallel
Strand 5
D
451 458anti-parallel
Strand 6
D
468 473anti-parallel
Strand 7
D
476 482anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 21first strand
Strand 2
E
36 37anti-parallel
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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
103 107first strand
Strand 2
E
71 75parallel
Strand 3
E
141 145parallel
Strand 4
E
177 183parallel
Strand 5
E
41 46parallel
Strand 6
E
203 212parallel
Strand 7
E
215 225anti-parallel
Strand 8
E
234 240anti-parallel
Strand 9
E
243 246anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
262 263first strand
Strand 2
E
278 279anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
374 376first strand
Strand 2
E
409 413parallel
Strand 3
E
283 288parallel
Strand 4
E
436 442parallel
Strand 5
E
451 458anti-parallel
Strand 6
E
468 473anti-parallel
Strand 7
E
476 482anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 21first strand
Strand 2
F
36 37anti-parallel
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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
103 107first strand
Strand 2
F
71 75parallel
Strand 3
F
141 145parallel
Strand 4
F
177 183parallel
Strand 5
F
41 46parallel
Strand 6
F
203 212parallel
Strand 7
F
215 225anti-parallel
Strand 8
F
234 240anti-parallel
Strand 9
F
243 246anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
262 263first strand
Strand 2
F
278 279anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
374 376first strand
Strand 2
F
409 413parallel
Strand 3
F
283 288parallel
Strand 4
F
436 442parallel
Strand 5
F
451 458anti-parallel
Strand 6
F
468 473anti-parallel
Strand 7
F
476 482anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
40 45first strand
Strand 2
G
8 13parallel
Strand 3
G
63 68anti-parallel
Strand 4
G
73 75anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
40 45first strand
Strand 2
H
8 13parallel
Strand 3
H
63 68anti-parallel
Strand 4
H
73 75anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
40 45first strand
Strand 2
K
8 13parallel
Strand 3
K
63 68anti-parallel
Strand 4
K
73 75anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
40 45first strand
Strand 2
J
8 13parallel
Strand 3
J
63 68anti-parallel
Strand 4
J
73 75anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
40 45first strand
Strand 2
I
8 13parallel
Strand 3
I
63 68anti-parallel
Strand 4
I
73 75anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
40 45first strand
Strand 2
L
8 13parallel
Strand 3
L
63 68anti-parallel
Strand 4
L
73 75anti-parallel
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