Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N9B entry

There is 1 chain in PDB entry 5N9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 33GLU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5N9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 192Right-handed alpha
Helix 2
AA2
A
193 199Right-handed alpha
Helix 3
AA3
A
256 260Right-handed 310
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There are 4 sheets in PDB entry 5N9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
74 84anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
124 131anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
156 164anti-parallel
Strand 6
A
176 181anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
263 269anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 252first strand
Strand 2
A
230 237anti-parallel
Strand 3
A
278 285anti-parallel
Strand 4
A
297 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il