Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N9G entry

There are 8 chains in PDB entry 5N9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 65GLN 406
B
 GLY 157GLY 334
C
 GLY 286LYS 382
D
 G 2 C 28
E
 T 2 C 26
F
 VAL 65ALA 407
G
 GLY 157GLY 334
H
 SER 287ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5N9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 83Right-handed alpha
Helix 2
AA2
A
86 102Right-handed alpha
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
110 129Right-handed alpha
Helix 5
AA5
A
134 143Right-handed alpha
Helix 6
AA6
A
145 161Right-handed alpha
Helix 7
AA7
A
168 179Right-handed alpha
Helix 8
AA8
A
190 194Right-handed 310
Helix 9
AA9
A
196 214Right-handed alpha
Helix 10
AB1
A
221 238Right-handed alpha
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
246 254Right-handed alpha
Helix 13
AB4
A
261 278Right-handed alpha
Helix 14
AB5
A
280 285Right-handed alpha
Helix 15
AB6
A
293 295Right-handed 310
Helix 16
AB7
A
296 303Right-handed alpha
Helix 17
AB8
A
303 312Right-handed alpha
Helix 18
AB9
A
359 363Right-handed 310
Helix 19
AC1
A
385 391Right-handed alpha
Helix 20
AC2
A
395 406Right-handed alpha
Helix 21
AC3
B
179 187Right-handed alpha
Helix 22
AC4
B
226 244Right-handed alpha
Helix 23
AC5
B
269 277Right-handed alpha
Helix 24
AC6
B
317 334Right-handed alpha
Helix 25
AC7
C
304 318Right-handed alpha
Helix 26
AC8
C
321 329Right-handed alpha
Helix 27
AC9
C
333 348Right-handed alpha
Helix 28
AD1
C
348 358Right-handed alpha
Helix 29
AD2
C
363 382Right-handed alpha
Helix 30
AD3
F
66 83Right-handed alpha
Helix 31
AD4
F
86 102Right-handed alpha
Helix 32
AD5
F
103 108Right-handed alpha
Helix 33
AD6
F
110 128Right-handed alpha
Helix 34
AD7
F
134 143Right-handed alpha
Helix 35
AD8
F
145 161Right-handed alpha
Helix 36
AD9
F
168 179Right-handed alpha
Helix 37
AE1
F
190 194Right-handed 310
Helix 38
AE2
F
196 214Right-handed alpha
Helix 39
AE3
F
221 238Right-handed alpha
Helix 40
AE4
F
238 243Right-handed alpha
Helix 41
AE5
F
246 254Right-handed alpha
Helix 42
AE6
F
261 278Right-handed alpha
Helix 43
AE7
F
280 285Right-handed alpha
Helix 44
AE8
F
293 295Right-handed 310
Helix 45
AE9
F
296 303Right-handed alpha
Helix 46
AF1
F
303 312Right-handed alpha
Helix 47
AF2
F
359 363Right-handed 310
Helix 48
AF3
F
385 391Right-handed alpha
Helix 49
AF4
F
395 406Right-handed alpha
Helix 50
AF5
G
179 187Right-handed alpha
Helix 51
AF6
G
226 244Right-handed alpha
Helix 52
AF7
G
269 277Right-handed alpha
Helix 53
AF8
G
317 334Right-handed alpha
Helix 54
AF9
H
304 318Right-handed alpha
Helix 55
AG1
H
321 329Right-handed alpha
Helix 56
AG2
H
333 348Right-handed alpha
Helix 57
AG3
H
348 358Right-handed alpha
Helix 58
AG4
H
363 384Right-handed alpha
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There are 2 sheets in PDB entry 5N9G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
197 204anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
218 224anti-parallel
Strand 5
B
164 173anti-parallel
Strand 6
B
251 263anti-parallel
Strand 7
B
309 315anti-parallel
Strand 8
B
300 304anti-parallel
Strand 9
B
291 295anti-parallel
Strand 10
B
281 282anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
190 193first strand
Strand 2
G
197 204anti-parallel
Strand 3
G
209 213anti-parallel
Strand 4
G
218 222anti-parallel
Strand 5
G
164 173anti-parallel
Strand 6
G
251 263anti-parallel
Strand 7
G
309 315anti-parallel
Strand 8
G
300 304anti-parallel
Strand 9
G
291 295anti-parallel
Strand 10
G
281 283anti-parallel
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