Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N9J entry

There are 15 chains in PDB entry 5N9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	CYS 576
B	THR 8	GLU 140
C	PRO 5	GLU 115
D	CYS 3	GLN 137
E	PHE 10	SER 335
F	ALA 12	SER 96
G	GLU 2	GLU 211
R	LEU 6	TRP 104
S	VAL 9	ALA 212
U	ASP 3	ARG 200
V	THR 14	MET 112
W	SER 17	SER 538
X	MET 1	LEU 207
Y	PRO 2	ILE 186
Z	SER 3	GLU 121

There are104 helices in PDB entry 5N9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	38	Right-handed alpha
Helix 2	AA2	A	42	71	Right-handed alpha
Helix 3	AA3	A	73	112	Right-handed alpha
Helix 4	AA4	A	117	126	Right-handed alpha
Helix 5	AA5	A	129	136	Right-handed alpha
Helix 6	AA6	A	136	143	Right-handed alpha
Helix 7	AA7	A	150	172	Right-handed alpha
Helix 8	AA8	A	176	180	Right-handed 310
Helix 9	AA9	A	211	219	Right-handed alpha
Helix 10	AB1	A	234	255	Right-handed alpha
Helix 11	AB2	A	257	288	Right-handed alpha
Helix 12	AB3	A	290	292	Right-handed 310
Helix 13	AB4	A	338	345	Right-handed alpha
Helix 14	AB5	A	378	402	Right-handed alpha
Helix 15	AB6	A	447	459	Right-handed alpha
Helix 16	AB7	A	463	486	Right-handed alpha
Helix 17	AB8	A	505	509	Right-handed 310
Helix 18	AB9	A	510	514	Right-handed 310
Helix 19	AC1	A	552	576	Right-handed alpha
Helix 20	AC2	B	9	34	Right-handed alpha
Helix 21	AC3	B	42	66	Right-handed alpha
Helix 22	AC4	B	71	79	Right-handed alpha
Helix 23	AC5	B	82	123	Right-handed alpha
Helix 24	AC6	B	126	138	Right-handed alpha
Helix 25	AC7	C	25	30	Right-handed alpha
Helix 26	AC8	C	32	40	Right-handed alpha
Helix 27	AC9	C	55	60	Right-handed alpha
Helix 28	AD1	C	72	80	Right-handed alpha
Helix 29	AD2	C	89	98	Right-handed alpha
Helix 30	AD3	C	108	113	Right-handed 310
Helix 31	AD4	D	4	29	Right-handed alpha
Helix 32	AD5	D	42	47	Right-handed alpha
Helix 33	AD6	D	50	79	Right-handed alpha
Helix 34	AD7	D	86	137	Right-handed alpha
Helix 35	AD8	E	17	23	Right-handed alpha
Helix 36	AD9	E	24	38	Right-handed alpha
Helix 37	AE1	E	56	65	Right-handed alpha
Helix 38	AE2	E	191	196	Right-handed alpha
Helix 39	AE3	E	223	249	Right-handed alpha
Helix 40	AE4	E	252	315	Right-handed alpha
Helix 41	AE5	E	321	335	Right-handed alpha
Helix 42	AE6	F	16	34	Right-handed alpha
Helix 43	AE7	F	43	62	Right-handed alpha
Helix 44	AE8	F	69	96	Right-handed alpha
Helix 45	AE9	G	3	24	Right-handed alpha
Helix 46	AF1	G	26	86	Right-handed alpha
Helix 47	AF2	G	104	118	Right-handed alpha
Helix 48	AF3	G	142	149	Right-handed alpha
Helix 49	AF4	G	149	159	Right-handed alpha
Helix 50	AF5	G	163	173	Right-handed alpha
Helix 51	AF6	R	12	29	Right-handed alpha
Helix 52	AF7	R	29	39	Right-handed alpha
Helix 53	AF8	R	40	43	Right-handed 310
Helix 54	AF9	R	44	55	Right-handed alpha
Helix 55	AG1	R	56	58	Right-handed 310
Helix 56	AG2	R	59	64	Right-handed alpha
Helix 57	AG3	R	69	79	Right-handed alpha
Helix 58	AG4	R	80	89	Right-handed alpha
Helix 59	AG5	R	89	104	Right-handed alpha
Helix 60	AG6	S	18	26	Right-handed alpha
Helix 61	AG7	S	29	40	Right-handed alpha
Helix 62	AG8	S	47	56	Right-handed alpha
Helix 63	AG9	S	62	73	Right-handed alpha
Helix 64	AH1	S	120	146	Right-handed alpha
Helix 65	AH2	S	193	212	Right-handed alpha
Helix 66	AH3	U	4	37	Right-handed alpha
Helix 67	AH4	U	42	67	Right-handed alpha
Helix 68	AH5	U	67	73	Right-handed alpha
Helix 69	AH6	U	81	85	Right-handed 310
Helix 70	AH7	U	89	95	Right-handed alpha
Helix 71	AH8	U	100	121	Right-handed alpha
Helix 72	AH9	U	123	151	Right-handed alpha
Helix 73	AI1	U	159	166	Right-handed alpha
Helix 74	AI2	U	169	197	Right-handed alpha
Helix 75	AI3	V	16	31	Right-handed alpha
Helix 76	AI4	V	32	49	Right-handed alpha
Helix 77	AI5	V	50	82	Right-handed alpha
Helix 78	AI6	V	97	112	Right-handed alpha
Helix 79	AI7	W	34	46	Right-handed alpha
Helix 80	AI8	W	52	66	Right-handed alpha
Helix 81	AI9	W	100	134	Right-handed alpha
Helix 82	AJ1	W	135	138	Right-handed 310
Helix 83	AJ2	W	142	149	Right-handed alpha
Helix 84	AJ3	W	165	214	Right-handed alpha
Helix 85	AJ4	W	292	321	Right-handed alpha
Helix 86	AJ5	W	322	325	Right-handed 310
Helix 87	AJ6	W	379	403	Right-handed alpha
Helix 88	AJ7	W	424	448	Right-handed alpha
Helix 89	AJ8	W	458	463	Right-handed 310
Helix 90	AJ9	W	465	474	Right-handed alpha
Helix 91	AK1	W	522	533	Right-handed alpha
Helix 92	AK2	X	11	26	Right-handed alpha
Helix 93	AK3	X	50	55	Right-handed alpha
Helix 94	AK4	X	64	69	Right-handed alpha
Helix 95	AK5	X	108	117	Right-handed alpha
Helix 96	AK6	X	178	200	Right-handed alpha
Helix 97	AK7	Y	11	16	Right-handed alpha
Helix 98	AK8	Y	17	30	Right-handed alpha
Helix 99	AK9	Y	77	88	Right-handed alpha
Helix 100	AL1	Y	135	151	Right-handed alpha
Helix 101	AL2	Y	174	186	Right-handed alpha
Helix 102	AL3	Z	5	40	Right-handed alpha
Helix 103	AL4	Z	45	84	Right-handed alpha
Helix 104	AL5	Z	99	112	Right-handed alpha

There are 15 sheets in PDB entry 5N9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	B	68	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	227	230	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	299	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	327	334	anti-parallel
Strand 4	A	356	364	anti-parallel
Strand 5	A	367	371	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	422	428	anti-parallel
Strand 4	A	435	439	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	492	first strand
Strand 2	A	500	504	anti-parallel
Strand 3	A	515	521	anti-parallel
Strand 4	A	526	532	anti-parallel
Strand 5	A	538	544	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	219	222	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	W	20	21	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	75	83	first strand
Strand 2	S	88	98	anti-parallel
Strand 3	S	101	111	anti-parallel
Strand 4	S	114	116	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	148	150	first strand
Strand 2	S	154	156	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	74	78	first strand
Strand 2	W	154	158	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	218	220	first strand
Strand 2	W	227	229	anti-parallel
Strand 3	W	242	247	anti-parallel
Strand 4	W	252	256	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	277	282	first strand
Strand 2	W	263	271	anti-parallel
Strand 3	W	341	350	anti-parallel
Strand 4	W	333	337	anti-parallel
Strand 5	W	327	328	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	451	453	first strand
Strand 2	W	480	485	anti-parallel
Strand 3	W	493	497	anti-parallel
Strand 4	W	509	513	anti-parallel
Strand 5	W	516	520	anti-parallel

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There are 13 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	7	10	first strand
Strand 2	X	165	173	anti-parallel
Strand 3	X	2	5	anti-parallel
Strand 4	X	95	105	anti-parallel
Strand 5	Y	72	76	anti-parallel
Strand 6	Y	64	68	anti-parallel
Strand 7	Y	51	57	anti-parallel
Strand 8	Y	32	45	anti-parallel
Strand 9	Y	95	105	anti-parallel
Strand 10	Y	108	116	anti-parallel
Strand 11	Y	124	130	anti-parallel
Strand 12	Y	3	8	anti-parallel
Strand 13	Y	166	167	anti-parallel

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There are 17 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	7	10	first strand
Strand 2	X	165	173	anti-parallel
Strand 3	X	136	144	anti-parallel
Strand 4	X	118	133	anti-parallel
Strand 5	X	27	41	anti-parallel
Strand 6	X	57	61	anti-parallel
Strand 7	X	78	83	anti-parallel
Strand 8	X	95	105	anti-parallel
Strand 9	Y	72	76	anti-parallel
Strand 10	Y	64	68	anti-parallel
Strand 11	Y	51	57	anti-parallel
Strand 12	Y	32	45	anti-parallel
Strand 13	Y	95	105	anti-parallel
Strand 14	Y	108	116	anti-parallel
Strand 15	Y	124	130	anti-parallel
Strand 16	Y	3	8	anti-parallel
Strand 17	Y	166	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9J