Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N9M entry

There are 2 chains in PDB entry 5N9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 243
B
 MET 1GLN 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5N9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
62 74Right-handed alpha
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
192 195Right-handed 310
Helix 6
AA6
A
196 212Right-handed alpha
Helix 7
AA7
A
222 239Right-handed alpha
Helix 8
AA8
B
19 32Right-handed alpha
Helix 9
AA9
B
62 74Right-handed alpha
Helix 10
AB1
B
76 87Right-handed alpha
Helix 11
AB2
B
94 99Right-handed alpha
Helix 12
AB3
B
192 195Right-handed 310
Helix 13
AB4
B
196 212Right-handed alpha
Helix 14
AB5
B
222 237Right-handed alpha
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There are 6 sheets in PDB entry 5N9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 42first strand
Strand 2
A
2 9parallel
Strand 3
A
55 58parallel
Strand 4
A
90 93parallel
Strand 5
A
183 186parallel
Strand 6
A
178 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
103 105anti-parallel
Strand 3
A
121 137parallel
Strand 4
A
141 154anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
103 105anti-parallel
Strand 3
A
121 137parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
175 176anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 42first strand
Strand 2
B
2 9parallel
Strand 3
B
55 58parallel
Strand 4
B
90 93parallel
Strand 5
B
183 186parallel
Strand 6
B
178 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
103 105anti-parallel
Strand 3
B
121 137parallel
Strand 4
B
141 154anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
103 105anti-parallel
Strand 3
B
121 137parallel
Strand 4
B
161 165anti-parallel
Strand 5
B
175 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il