Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N9W entry

There are 2 chains in PDB entry 5N9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 18	ARG 529
B	GLU 15	ARG 529

There are 34 helices in PDB entry 5N9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	46	63	Right-handed alpha
Helix 3	AA3	A	78	91	Right-handed alpha
Helix 4	AA4	A	103	115	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	181	192	Right-handed alpha
Helix 7	AA7	A	212	223	Right-handed alpha
Helix 8	AA8	A	239	249	Right-handed alpha
Helix 9	AA9	A	257	272	Right-handed alpha
Helix 10	AB1	A	289	301	Right-handed alpha
Helix 11	AB2	A	313	317	Right-handed 310
Helix 12	AB3	A	326	332	Right-handed alpha
Helix 13	AB4	A	378	385	Right-handed alpha
Helix 14	AB5	A	435	444	Right-handed alpha
Helix 15	AB6	A	481	493	Right-handed alpha
Helix 16	AB7	A	494	498	Right-handed 310
Helix 17	AB8	A	517	529	Right-handed alpha
Helix 18	AB9	B	19	31	Right-handed alpha
Helix 19	AC1	B	46	63	Right-handed alpha
Helix 20	AC2	B	78	91	Right-handed alpha
Helix 21	AC3	B	103	115	Right-handed alpha
Helix 22	AC4	B	135	142	Right-handed alpha
Helix 23	AC5	B	181	191	Right-handed alpha
Helix 24	AC6	B	212	222	Right-handed alpha
Helix 25	AC7	B	239	249	Right-handed alpha
Helix 26	AC8	B	257	272	Right-handed alpha
Helix 27	AC9	B	289	301	Right-handed alpha
Helix 28	AD1	B	313	317	Right-handed 310
Helix 29	AD2	B	326	332	Right-handed alpha
Helix 30	AD3	B	378	385	Right-handed alpha
Helix 31	AD4	B	435	444	Right-handed alpha
Helix 32	AD5	B	481	493	Right-handed alpha
Helix 33	AD6	B	494	498	Right-handed 310
Helix 34	AD7	B	517	529	Right-handed alpha

There are 14 sheets in PDB entry 5N9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	227	230	parallel
Strand 4	A	202	205	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	70	74	parallel
Strand 3	A	118	121	parallel
Strand 4	A	133	134	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	175	180	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	280	283	parallel
Strand 3	A	306	309	parallel
Strand 4	A	321	324	anti-parallel
Strand 5	A	335	340	anti-parallel
Strand 6	A	416	421	anti-parallel
Strand 7	A	401	410	anti-parallel
Strand 8	A	362	367	anti-parallel
Strand 9	A	345	349	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	280	283	parallel
Strand 3	A	306	309	parallel
Strand 4	A	321	324	anti-parallel
Strand 5	A	335	340	anti-parallel
Strand 6	A	416	421	anti-parallel
Strand 7	A	401	410	anti-parallel
Strand 8	A	386	387	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	431	434	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	459	first strand
Strand 2	A	462	471	anti-parallel
Strand 3	A	501	504	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	227	230	parallel
Strand 4	B	202	205	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	70	74	parallel
Strand 3	B	118	121	parallel
Strand 4	B	133	134	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	168	first strand
Strand 2	B	174	180	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	280	283	parallel
Strand 3	B	306	309	parallel
Strand 4	B	321	324	anti-parallel
Strand 5	B	336	340	anti-parallel
Strand 6	B	416	421	anti-parallel
Strand 7	B	401	410	anti-parallel
Strand 8	B	362	367	anti-parallel
Strand 9	B	345	349	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	280	283	parallel
Strand 3	B	306	309	parallel
Strand 4	B	321	324	anti-parallel
Strand 5	B	336	340	anti-parallel
Strand 6	B	416	421	anti-parallel
Strand 7	B	401	410	anti-parallel
Strand 8	B	386	387	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	431	434	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	459	first strand
Strand 2	B	462	471	anti-parallel
Strand 3	B	501	504	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9W