Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N9Y entry

There are 5 chains in PDB entry 5N9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 327
B	MET 1	LEU 327
C	MET 1	LEU 327
D	MET 1	LEU 327
E	MET 1	LEU 327

There are 49 helices in PDB entry 5N9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed alpha
Helix 2	AA2	A	49	59	Right-handed alpha
Helix 3	AA3	A	64	70	Right-handed alpha
Helix 4	AA4	A	124	136	Right-handed alpha
Helix 5	AA5	A	142	167	Right-handed alpha
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	186	213	Right-handed alpha
Helix 8	AA8	A	220	267	Right-handed alpha
Helix 9	AA9	A	268	276	Right-handed alpha
Helix 10	AB1	A	279	284	Right-handed alpha
Helix 11	AB2	A	302	322	Right-handed alpha
Helix 12	AB3	B	6	10	Right-handed alpha
Helix 13	AB4	B	49	59	Right-handed alpha
Helix 14	AB5	B	63	67	Right-handed 310
Helix 15	AB6	B	124	137	Right-handed alpha
Helix 16	AB7	B	142	170	Right-handed alpha
Helix 17	AB8	B	185	202	Right-handed alpha
Helix 18	AB9	B	204	213	Right-handed alpha
Helix 19	AC1	B	220	277	Right-handed alpha
Helix 20	AC2	B	277	288	Right-handed alpha
Helix 21	AC3	B	301	322	Right-handed alpha
Helix 22	AC4	C	49	59	Right-handed alpha
Helix 23	AC5	C	63	67	Right-handed 310
Helix 24	AC6	C	68	72	Right-handed 310
Helix 25	AC7	C	124	135	Right-handed alpha
Helix 26	AC8	C	142	171	Right-handed alpha
Helix 27	AC9	C	172	176	Right-handed 310
Helix 28	AD1	C	186	212	Right-handed alpha
Helix 29	AD2	C	220	277	Right-handed alpha
Helix 30	AD3	C	279	288	Right-handed alpha
Helix 31	AD4	C	302	325	Right-handed alpha
Helix 32	AD5	D	49	59	Right-handed alpha
Helix 33	AD6	D	63	67	Right-handed 310
Helix 34	AD7	D	68	72	Right-handed 310
Helix 35	AD8	D	124	137	Right-handed alpha
Helix 36	AD9	D	142	172	Right-handed alpha
Helix 37	AE1	D	186	214	Right-handed alpha
Helix 38	AE2	D	220	277	Right-handed alpha
Helix 39	AE3	D	278	288	Right-handed alpha
Helix 40	AE4	D	301	324	Right-handed alpha
Helix 41	AE5	E	5	10	Right-handed alpha
Helix 42	AE6	E	49	59	Right-handed alpha
Helix 43	AE7	E	125	133	Right-handed alpha
Helix 44	AE8	E	142	170	Right-handed alpha
Helix 45	AE9	E	171	176	Right-handed 310
Helix 46	AF1	E	186	213	Right-handed alpha
Helix 47	AF2	E	220	276	Right-handed alpha
Helix 48	AF3	E	279	288	Right-handed alpha
Helix 49	AF4	E	302	322	Right-handed alpha

There are 11 sheets in PDB entry 5N9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	34	35	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	A	41	44	anti-parallel
Strand 4	A	115	119	parallel
Strand 5	A	105	111	anti-parallel
Strand 6	A	85	92	anti-parallel
Strand 7	A	78	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	34	35	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	16	19	anti-parallel
Strand 3	B	41	46	anti-parallel
Strand 4	B	115	120	parallel
Strand 5	B	105	111	anti-parallel
Strand 6	B	85	92	anti-parallel
Strand 7	B	78	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	34	35	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	16	20	anti-parallel
Strand 3	C	41	46	anti-parallel
Strand 4	C	116	120	parallel
Strand 5	C	105	111	anti-parallel
Strand 6	C	85	92	anti-parallel
Strand 7	C	78	82	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	34	35	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	41	46	anti-parallel
Strand 3	D	115	120	parallel
Strand 4	D	105	111	anti-parallel
Strand 5	D	85	92	anti-parallel
Strand 6	D	78	82	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	26	27	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	41	44	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	82	first strand
Strand 2	E	85	89	anti-parallel
Strand 3	E	108	111	anti-parallel
Strand 4	E	117	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N9Y