Analysis of interatomic Contacts of Structural Units in PDB entry:
5NA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NA7 entry

There is 1 chain in PDB entry 5NA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 24ASN 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5NA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
48 64Right-handed alpha
Helix 3
AA3
A
65 73Right-handed alpha
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
153 167Right-handed alpha
Helix 9
AA9
A
196 208Right-handed alpha
Helix 10
AB1
A
242 258Right-handed alpha
Helix 11
AB2
A
262 279Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
327 340Right-handed alpha
Helix 14
AB5
A
340 348Right-handed alpha
Helix 15
AB6
A
351 355Right-handed 310
Helix 16
AB7
A
389 396Right-handed alpha
Helix 17
AB8
A
404 415Right-handed alpha
Helix 18
AB9
A
418 424Right-handed alpha
Helix 19
AC1
A
426 451Right-handed alpha
Helix 20
AC2
A
467 469Right-handed 310
Helix 21
AC3
A
470 488Right-handed alpha
Helix 22
AC4
A
490 495Right-handed alpha
Helix 23
AC5
A
503 517Right-handed alpha
Helix 24
AC6
A
518 523Right-handed 310
Helix 25
AC7
A
531 549Right-handed alpha
Helix 26
AC8
A
550 552Right-handed 310
Helix 27
AC9
A
569 591Right-handed alpha
Helix 28
AD1
A
592 604Right-handed alpha
Helix 29
AD2
A
608 621Right-handed alpha
Helix 30
AD3
A
655 667Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5NA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
627 631parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
222 225parallel
Strand 3
A
232 235anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 305first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
365 374anti-parallel
Strand 4
A
399 403parallel
Strand 5
A
383 386anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 559first strand
Strand 2
A
562 567anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 639first strand
Strand 2
A
645 651anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il