Analysis of interatomic Contacts of Structural Units in PDB entry:
5NA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NA8 entry

There are 2 chains in PDB entry 5NA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25ASN 675
B
 PHE 24ASN 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5NA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 64Right-handed alpha
Helix 2
AA2
A
65 73Right-handed alpha
Helix 3
AA3
A
76 90Right-handed alpha
Helix 4
AA4
A
97 114Right-handed alpha
Helix 5
AA5
A
130 140Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
153 167Right-handed alpha
Helix 8
AA8
A
196 208Right-handed alpha
Helix 9
AA9
A
242 259Right-handed alpha
Helix 10
AB1
A
262 279Right-handed alpha
Helix 11
AB2
A
280 294Right-handed alpha
Helix 12
AB3
A
327 340Right-handed alpha
Helix 13
AB4
A
340 347Right-handed alpha
Helix 14
AB5
A
351 355Right-handed 310
Helix 15
AB6
A
389 396Right-handed alpha
Helix 16
AB7
A
404 415Right-handed alpha
Helix 17
AB8
A
418 424Right-handed alpha
Helix 18
AB9
A
426 451Right-handed alpha
Helix 19
AC1
A
467 469Right-handed 310
Helix 20
AC2
A
470 488Right-handed alpha
Helix 21
AC3
A
490 495Right-handed alpha
Helix 22
AC4
A
503 517Right-handed alpha
Helix 23
AC5
A
518 523Right-handed 310
Helix 24
AC6
A
531 548Right-handed alpha
Helix 25
AC7
A
569 591Right-handed alpha
Helix 26
AC8
A
592 604Right-handed alpha
Helix 27
AC9
A
608 621Right-handed alpha
Helix 28
AD1
A
655 667Right-handed alpha
Helix 29
AD2
B
48 64Right-handed alpha
Helix 30
AD3
B
65 73Right-handed alpha
Helix 31
AD4
B
76 90Right-handed alpha
Helix 32
AD5
B
97 114Right-handed alpha
Helix 33
AD6
B
130 140Right-handed alpha
Helix 34
AD7
B
153 167Right-handed alpha
Helix 35
AD8
B
196 206Right-handed alpha
Helix 36
AD9
B
242 259Right-handed alpha
Helix 37
AE1
B
262 279Right-handed alpha
Helix 38
AE2
B
280 294Right-handed alpha
Helix 39
AE3
B
327 340Right-handed alpha
Helix 40
AE4
B
340 347Right-handed alpha
Helix 41
AE5
B
351 355Right-handed 310
Helix 42
AE6
B
389 396Right-handed alpha
Helix 43
AE7
B
404 415Right-handed alpha
Helix 44
AE8
B
418 424Right-handed alpha
Helix 45
AE9
B
426 451Right-handed alpha
Helix 46
AF1
B
467 469Right-handed 310
Helix 47
AF2
B
470 488Right-handed alpha
Helix 48
AF3
B
490 495Right-handed alpha
Helix 49
AF4
B
503 517Right-handed alpha
Helix 50
AF5
B
518 523Right-handed 310
Helix 51
AF6
B
531 548Right-handed alpha
Helix 52
AF7
B
569 591Right-handed alpha
Helix 53
AF8
B
592 604Right-handed alpha
Helix 54
AF9
B
608 621Right-handed alpha
Helix 55
AG1
B
655 667Right-handed alpha
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There are 10 sheets in PDB entry 5NA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
627 630parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
222 225parallel
Strand 3
A
232 235anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 305first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
362 374anti-parallel
Strand 4
A
398 403parallel
Strand 5
A
383 386anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 559first strand
Strand 2
A
562 567anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 639first strand
Strand 2
A
645 651anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
627 631parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
232 235anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 305first strand
Strand 2
B
319 326anti-parallel
Strand 3
B
362 374anti-parallel
Strand 4
B
398 403parallel
Strand 5
B
383 386anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
554 559first strand
Strand 2
B
562 567anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 639first strand
Strand 2
B
645 651anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il