Analysis of interatomic Contacts of Structural Units in PDB entry:
5NAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NAQ entry

There are 6 chains in PDB entry 5NAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 291
A	LEU 293	PHE 461
B	MET 1	ASP 291
B	LEU 293	PHE 461
C	MET 1	ASP 291
C	LEU 293	TRP 316

There are122 helices in PDB entry 5NAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	29	38	Right-handed alpha
Helix 3	AA3	A	39	46	Right-handed 310
Helix 4	AA4	A	53	68	Right-handed alpha
Helix 5	AA5	A	78	83	Right-handed alpha
Helix 6	AA6	A	92	109	Right-handed alpha
Helix 7	AA7	A	123	131	Right-handed alpha
Helix 8	AA8	A	132	134	Right-handed 310
Helix 9	AA9	A	135	154	Right-handed alpha
Helix 10	AB1	A	165	175	Right-handed alpha
Helix 11	AB2	A	185	211	Right-handed alpha
Helix 12	AB3	A	233	248	Right-handed alpha
Helix 13	AB4	A	248	257	Right-handed alpha
Helix 14	AB5	A	261	271	Right-handed alpha
Helix 15	AB6	A	278	288	Right-handed alpha
Helix 16	AB7	A	317	322	Right-handed 310
Helix 17	AB8	A	342	356	Right-handed alpha
Helix 18	AB9	A	372	377	Right-handed 310
Helix 19	AC1	A	385	405	Right-handed alpha
Helix 20	AC2	A	422	426	Right-handed 310
Helix 21	AC3	A	446	459	Right-handed alpha
Helix 22	AC4	B	15	20	Right-handed alpha
Helix 23	AC5	B	29	38	Right-handed alpha
Helix 24	AC6	B	39	46	Right-handed 310
Helix 25	AC7	B	53	68	Right-handed alpha
Helix 26	AC8	B	78	83	Right-handed alpha
Helix 27	AC9	B	92	109	Right-handed alpha
Helix 28	AD1	B	123	131	Right-handed alpha
Helix 29	AD2	B	132	134	Right-handed 310
Helix 30	AD3	B	135	154	Right-handed alpha
Helix 31	AD4	B	165	175	Right-handed alpha
Helix 32	AD5	B	185	211	Right-handed alpha
Helix 33	AD6	B	233	248	Right-handed alpha
Helix 34	AD7	B	248	258	Right-handed alpha
Helix 35	AD8	B	261	271	Right-handed alpha
Helix 36	AD9	B	278	288	Right-handed alpha
Helix 37	AE1	B	317	322	Right-handed 310
Helix 38	AE2	B	342	356	Right-handed alpha
Helix 39	AE3	B	372	377	Right-handed 310
Helix 40	AE4	B	385	405	Right-handed alpha
Helix 41	AE5	B	422	426	Right-handed 310
Helix 42	AE6	B	446	459	Right-handed alpha
Helix 43	AE7	C	29	38	Right-handed alpha
Helix 44	AE8	C	39	46	Right-handed 310
Helix 45	AE9	C	53	68	Right-handed alpha
Helix 46	AF1	C	78	83	Right-handed alpha
Helix 47	AF2	C	92	109	Right-handed alpha
Helix 48	AF3	C	123	131	Right-handed alpha
Helix 49	AF4	C	132	134	Right-handed 310
Helix 50	AF5	C	135	154	Right-handed alpha
Helix 51	AF6	C	165	175	Right-handed alpha
Helix 52	AF7	C	185	211	Right-handed alpha
Helix 53	AF8	C	233	248	Right-handed alpha
Helix 54	AF9	C	248	258	Right-handed alpha
Helix 55	AG1	C	261	271	Right-handed alpha
Helix 56	AG2	C	278	288	Right-handed alpha
Helix 57	AG3	C	317	322	Right-handed 310
Helix 58	AG4	C	342	356	Right-handed alpha
Helix 59	AG5	C	373	377	Right-handed 310
Helix 60	AG6	C	385	405	Right-handed alpha
Helix 61	AG7	C	422	426	Right-handed 310
Helix 62	AG8	C	446	459	Right-handed alpha
Helix 63	AG9	D	29	38	Right-handed alpha
Helix 64	AH1	D	39	46	Right-handed 310
Helix 65	AH2	D	53	68	Right-handed alpha
Helix 66	AH3	D	78	83	Right-handed alpha
Helix 67	AH4	D	92	109	Right-handed alpha
Helix 68	AH5	D	123	131	Right-handed alpha
Helix 69	AH6	D	132	134	Right-handed 310
Helix 70	AH7	D	135	154	Right-handed alpha
Helix 71	AH8	D	165	175	Right-handed alpha
Helix 72	AH9	D	185	211	Right-handed alpha
Helix 73	AI1	D	233	248	Right-handed alpha
Helix 74	AI2	D	248	258	Right-handed alpha
Helix 75	AI3	D	261	271	Right-handed alpha
Helix 76	AI4	D	278	288	Right-handed alpha
Helix 77	AI5	D	317	322	Right-handed 310
Helix 78	AI6	D	342	356	Right-handed alpha
Helix 79	AI7	D	373	377	Right-handed 310
Helix 80	AI8	D	385	405	Right-handed alpha
Helix 81	AI9	D	422	426	Right-handed 310
Helix 82	AJ1	D	446	459	Right-handed alpha
Helix 83	AJ2	E	29	38	Right-handed alpha
Helix 84	AJ3	E	39	46	Right-handed 310
Helix 85	AJ4	E	53	68	Right-handed alpha
Helix 86	AJ5	E	78	83	Right-handed alpha
Helix 87	AJ6	E	92	109	Right-handed alpha
Helix 88	AJ7	E	123	131	Right-handed alpha
Helix 89	AJ8	E	132	134	Right-handed 310
Helix 90	AJ9	E	135	154	Right-handed alpha
Helix 91	AK1	E	165	175	Right-handed alpha
Helix 92	AK2	E	185	211	Right-handed alpha
Helix 93	AK3	E	233	248	Right-handed alpha
Helix 94	AK4	E	248	257	Right-handed alpha
Helix 95	AK5	E	261	271	Right-handed alpha
Helix 96	AK6	E	278	288	Right-handed alpha
Helix 97	AK7	E	317	322	Right-handed 310
Helix 98	AK8	E	342	356	Right-handed alpha
Helix 99	AK9	E	373	377	Right-handed 310
Helix 100	AL1	E	385	405	Right-handed alpha
Helix 101	AL2	E	422	426	Right-handed 310
Helix 102	AL3	E	446	459	Right-handed alpha
Helix 103	AL4	F	29	38	Right-handed alpha
Helix 104	AL5	F	39	46	Right-handed 310
Helix 105	AL6	F	53	68	Right-handed alpha
Helix 106	AL7	F	78	83	Right-handed alpha
Helix 107	AL8	F	92	109	Right-handed alpha
Helix 108	AL9	F	123	131	Right-handed alpha
Helix 109	AM1	F	132	134	Right-handed 310
Helix 110	AM2	F	135	154	Right-handed alpha
Helix 111	AM3	F	165	175	Right-handed alpha
Helix 112	AM4	F	185	210	Right-handed alpha
Helix 113	AM5	F	233	248	Right-handed alpha
Helix 114	AM6	F	248	257	Right-handed alpha
Helix 115	AM7	F	261	271	Right-handed alpha
Helix 116	AM8	F	278	288	Right-handed alpha
Helix 117	AM9	F	317	322	Right-handed 310
Helix 118	AN1	F	342	356	Right-handed alpha
Helix 119	AN2	F	372	377	Right-handed 310
Helix 120	AN3	F	385	405	Right-handed alpha
Helix 121	AN4	F	422	426	Right-handed 310
Helix 122	AN5	F	446	459	Right-handed alpha

There are 33 sheets in PDB entry 5NAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	460	461	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	72	76	parallel
Strand 3	A	112	116	parallel
Strand 4	A	159	164	parallel
Strand 5	A	217	223	parallel
Strand 6	A	292	296	parallel
Strand 7	A	361	365	parallel
Strand 8	A	409	414	parallel
Strand 9	A	9	13	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	301	304	parallel
Strand 3	A	323	324	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	338	339	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	437	first strand
Strand 2	A	442	445	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	460	461	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	72	76	parallel
Strand 3	B	112	116	parallel
Strand 4	B	159	164	parallel
Strand 5	B	217	223	parallel
Strand 6	B	292	296	parallel
Strand 7	B	361	366	parallel
Strand 8	B	409	414	parallel
Strand 9	B	9	13	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	301	304	parallel
Strand 3	B	323	324	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	338	339	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	442	445	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	460	461	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	72	76	parallel
Strand 3	C	112	116	parallel
Strand 4	C	159	164	parallel
Strand 5	C	217	223	parallel
Strand 6	C	292	296	parallel
Strand 7	C	361	366	parallel
Strand 8	C	409	414	parallel
Strand 9	C	9	13	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	301	304	parallel
Strand 3	C	323	324	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	338	339	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	429	430	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	437	first strand
Strand 2	C	442	445	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	460	461	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	72	76	parallel
Strand 3	D	112	116	parallel
Strand 4	D	159	164	parallel
Strand 5	D	217	223	parallel
Strand 6	D	292	296	parallel
Strand 7	D	361	365	parallel
Strand 8	D	409	414	parallel
Strand 9	D	9	13	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	301	304	parallel
Strand 3	D	323	324	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	338	339	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	429	430	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	437	first strand
Strand 2	D	442	445	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	460	461	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	72	76	parallel
Strand 3	E	112	116	parallel
Strand 4	E	159	164	parallel
Strand 5	E	217	223	parallel
Strand 6	E	292	296	parallel
Strand 7	E	361	365	parallel
Strand 8	E	409	414	parallel
Strand 9	E	9	13	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	E	301	304	parallel
Strand 3	E	323	324	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	333	first strand
Strand 2	E	338	339	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	371	first strand
Strand 2	E	429	430	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	434	437	first strand
Strand 2	E	442	445	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	460	461	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	72	76	parallel
Strand 3	F	112	116	parallel
Strand 4	F	159	164	parallel
Strand 5	F	217	223	parallel
Strand 6	F	293	296	parallel
Strand 7	F	361	365	parallel
Strand 8	F	409	414	parallel
Strand 9	F	9	13	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	229	first strand
Strand 2	F	301	304	parallel
Strand 3	F	323	324	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	338	339	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	434	437	first strand
Strand 2	F	442	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NAQ