Analysis of interatomic Contacts of Structural Units in PDB entry:
5NB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NB0 entry

There are 8 chains in PDB entry 5NB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	LYS 228
B	THR 3	LYS 228
C	ARG 4	LYS 228
D	THR 2	LYS 228
E	ARG 4	LYS 228
F	THR 3	LYS 228
G	ARG 4	LYS 228
H	ARG 4	LYS 228

There are 40 helices in PDB entry 5NB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	51	Right-handed 310
Helix 2	AA2	A	97	105	Right-handed 310
Helix 3	AA3	A	149	151	Right-handed 310
Helix 4	AA4	A	160	162	Right-handed 310
Helix 5	AA5	A	214	218	Right-handed 310
Helix 6	AA6	B	49	51	Right-handed 310
Helix 7	AA7	B	101	105	Right-handed 310
Helix 8	AA8	B	149	151	Right-handed 310
Helix 9	AA9	B	160	162	Right-handed 310
Helix 10	AB1	B	215	219	Right-handed 310
Helix 11	AB2	C	49	51	Right-handed 310
Helix 12	AB3	C	97	102	Right-handed 310
Helix 13	AB4	C	149	151	Right-handed 310
Helix 14	AB5	C	160	162	Right-handed 310
Helix 15	AB6	C	214	219	Right-handed 310
Helix 16	AB7	D	49	51	Right-handed 310
Helix 17	AB8	D	97	102	Right-handed 310
Helix 18	AB9	D	149	151	Right-handed 310
Helix 19	AC1	D	160	162	Right-handed 310
Helix 20	AC2	D	215	219	Right-handed 310
Helix 21	AC3	E	49	51	Right-handed 310
Helix 22	AC4	E	97	105	Right-handed 310
Helix 23	AC5	E	149	151	Right-handed 310
Helix 24	AC6	E	160	162	Right-handed 310
Helix 25	AC7	E	215	219	Right-handed 310
Helix 26	AC8	F	49	51	Right-handed 310
Helix 27	AC9	F	97	102	Right-handed 310
Helix 28	AD1	F	149	151	Right-handed 310
Helix 29	AD2	F	160	162	Right-handed 310
Helix 30	AD3	F	215	219	Right-handed 310
Helix 31	AD4	G	49	51	Right-handed 310
Helix 32	AD5	G	97	105	Right-handed 310
Helix 33	AD6	G	149	151	Right-handed 310
Helix 34	AD7	G	160	162	Right-handed 310
Helix 35	AD8	G	214	218	Right-handed 310
Helix 36	AD9	H	49	51	Right-handed 310
Helix 37	AE1	H	97	102	Right-handed 310
Helix 38	AE2	H	149	151	Right-handed 310
Helix 39	AE3	H	160	162	Right-handed 310
Helix 40	AE4	H	214	219	Right-handed 310

There are 34 sheets in PDB entry 5NB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	25	38	anti-parallel
Strand 4	A	53	54	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	25	38	anti-parallel
Strand 3	A	79	83	anti-parallel
Strand 4	A	173	177	anti-parallel
Strand 5	A	182	183	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	221	227	anti-parallel
Strand 3	B	134	147	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	134	147	anti-parallel
Strand 3	B	189	193	anti-parallel
Strand 4	A	62	65	anti-parallel
Strand 5	A	71	73	anti-parallel
Strand 6	B	208	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	221	227	anti-parallel
Strand 3	A	134	147	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	134	147	anti-parallel
Strand 3	A	189	193	anti-parallel
Strand 4	C	62	65	anti-parallel
Strand 5	C	71	73	anti-parallel
Strand 6	A	208	210	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	25	38	anti-parallel
Strand 4	B	53	54	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	25	38	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	173	177	anti-parallel
Strand 5	B	182	183	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	221	227	anti-parallel
Strand 3	C	134	147	anti-parallel
Strand 4	C	164	165	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	134	147	anti-parallel
Strand 3	C	189	193	anti-parallel
Strand 4	B	62	65	anti-parallel
Strand 5	B	71	73	anti-parallel
Strand 6	C	208	210	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	107	113	anti-parallel
Strand 3	C	25	38	anti-parallel
Strand 4	C	53	54	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	25	38	anti-parallel
Strand 3	C	79	83	anti-parallel
Strand 4	C	173	177	anti-parallel
Strand 5	C	182	183	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	25	38	anti-parallel
Strand 4	D	53	54	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	25	38	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	173	177	anti-parallel
Strand 5	D	182	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	221	227	anti-parallel
Strand 3	F	134	147	anti-parallel
Strand 4	F	164	165	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	134	147	anti-parallel
Strand 3	F	189	193	anti-parallel
Strand 4	D	62	65	anti-parallel
Strand 5	D	71	73	anti-parallel
Strand 6	F	208	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	221	227	anti-parallel
Strand 3	D	134	147	anti-parallel
Strand 4	D	164	165	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	134	147	anti-parallel
Strand 3	D	189	193	anti-parallel
Strand 4	E	62	65	anti-parallel
Strand 5	E	71	73	anti-parallel
Strand 6	D	208	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	107	113	anti-parallel
Strand 3	E	25	38	anti-parallel
Strand 4	E	53	54	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	25	38	anti-parallel
Strand 3	E	79	83	anti-parallel
Strand 4	E	173	177	anti-parallel
Strand 5	E	182	183	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	221	227	anti-parallel
Strand 3	E	134	147	anti-parallel
Strand 4	E	164	165	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	134	147	anti-parallel
Strand 3	E	189	193	anti-parallel
Strand 4	F	62	65	anti-parallel
Strand 5	F	71	73	anti-parallel
Strand 6	E	208	210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	107	113	anti-parallel
Strand 3	F	25	38	anti-parallel
Strand 4	F	53	54	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	44	first strand
Strand 2	F	25	38	anti-parallel
Strand 3	F	79	83	anti-parallel
Strand 4	F	173	177	anti-parallel
Strand 5	F	182	183	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	107	113	anti-parallel
Strand 3	G	25	38	anti-parallel
Strand 4	G	53	54	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	44	first strand
Strand 2	G	25	38	anti-parallel
Strand 3	G	79	83	anti-parallel
Strand 4	G	173	177	anti-parallel
Strand 5	G	182	183	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	65	first strand
Strand 2	G	71	73	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	121	first strand
Strand 2	G	221	227	anti-parallel
Strand 3	G	134	147	anti-parallel
Strand 4	G	164	165	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	155	first strand
Strand 2	G	134	147	anti-parallel
Strand 3	G	189	192	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	107	113	anti-parallel
Strand 3	H	25	38	anti-parallel
Strand 4	H	53	54	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	44	first strand
Strand 2	H	25	38	anti-parallel
Strand 3	H	79	83	anti-parallel
Strand 4	H	173	177	anti-parallel
Strand 5	H	182	183	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	71	73	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	121	first strand
Strand 2	H	221	227	anti-parallel
Strand 3	H	134	147	anti-parallel
Strand 4	H	164	165	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	155	first strand
Strand 2	H	134	147	anti-parallel
Strand 3	H	189	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NB0