Analysis of interatomic Contacts of Structural Units in PDB entry:
5NB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NB2 entry

There are 2 chains in PDB entry 5NB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASN 227
B
 GLY 5LEU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5NB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
97 103Right-handed 310
Helix 3
AA3
A
158 160Right-handed 310
Helix 4
AA4
A
213 218Right-handed 310
Helix 5
AA5
B
49 51Right-handed 310
Helix 6
AA6
B
97 103Right-handed 310
Helix 7
AA7
B
158 160Right-handed 310
Helix 8
AA8
B
213 218Right-handed 310
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There are 9 sheets in PDB entry 5NB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
26 36anti-parallel
Strand 4
A
53 54anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
26 36anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
171 175anti-parallel
Strand 6
A
180 183anti-parallel
Strand 7
A
94 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
71 73anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
132 142anti-parallel
Strand 4
A
162 163anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
132 142anti-parallel
Strand 4
A
190 191anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
105 111anti-parallel
Strand 3
B
26 36anti-parallel
Strand 4
B
53 54anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
105 111anti-parallel
Strand 3
B
26 36anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
171 175anti-parallel
Strand 6
B
180 183anti-parallel
Strand 7
B
94 95anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
220 226anti-parallel
Strand 3
B
132 142anti-parallel
Strand 4
B
162 163anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
220 226anti-parallel
Strand 3
B
132 142anti-parallel
Strand 4
B
190 191anti-parallel
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