Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NBM entry

There are 6 chains in PDB entry 5NBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	GLY 479
B	SER 15	GLY 479
C	ASP 2	GLU 72
C	GLY 74	CYS 374
D	ASP 2	GLU 72
D	GLY 74	VAL 134

There are 93 helices in PDB entry 5NBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	63	Right-handed alpha
Helix 2	AA2	A	82	97	Right-handed alpha
Helix 3	AA3	A	117	130	Right-handed alpha
Helix 4	AA4	A	142	151	Right-handed alpha
Helix 5	AA5	A	177	180	Right-handed 310
Helix 6	AA6	A	186	199	Right-handed alpha
Helix 7	AA7	A	205	207	Right-handed 310
Helix 8	AA8	A	226	237	Right-handed alpha
Helix 9	AA9	A	237	246	Right-handed alpha
Helix 10	AB1	A	255	262	Right-handed 310
Helix 11	AB2	A	281	291	Right-handed alpha
Helix 12	AB3	A	296	300	Right-handed 310
Helix 13	AB4	A	384	395	Right-handed alpha
Helix 14	AB5	A	400	406	Right-handed alpha
Helix 15	AB6	A	412	417	Right-handed 310
Helix 16	AB7	A	419	432	Right-handed alpha
Helix 17	AB8	A	444	449	Right-handed 310
Helix 18	AB9	A	450	462	Right-handed alpha
Helix 19	AC1	A	472	479	Right-handed alpha
Helix 20	AC2	B	58	63	Right-handed alpha
Helix 21	AC3	B	82	97	Right-handed alpha
Helix 22	AC4	B	117	130	Right-handed alpha
Helix 23	AC5	B	142	151	Right-handed alpha
Helix 24	AC6	B	177	180	Right-handed 310
Helix 25	AC7	B	186	199	Right-handed alpha
Helix 26	AC8	B	205	207	Right-handed 310
Helix 27	AC9	B	226	237	Right-handed alpha
Helix 28	AD1	B	237	246	Right-handed alpha
Helix 29	AD2	B	255	262	Right-handed 310
Helix 30	AD3	B	281	291	Right-handed alpha
Helix 31	AD4	B	296	300	Right-handed 310
Helix 32	AD5	B	384	395	Right-handed alpha
Helix 33	AD6	B	397	406	Right-handed alpha
Helix 34	AD7	B	412	417	Right-handed 310
Helix 35	AD8	B	419	432	Right-handed alpha
Helix 36	AD9	B	444	449	Right-handed 310
Helix 37	AE1	B	450	462	Right-handed alpha
Helix 38	AE2	B	465	469	Right-handed 310
Helix 39	AE3	B	472	479	Right-handed alpha
Helix 40	AE4	C	55	60	Right-handed alpha
Helix 41	AE5	C	61	63	Right-handed 310
Helix 42	AE6	C	78	93	Right-handed alpha
Helix 43	AE7	C	97	101	Right-handed 310
Helix 44	AE8	C	112	126	Right-handed alpha
Helix 45	AE9	C	137	145	Right-handed alpha
Helix 46	AF1	C	172	175	Right-handed 310
Helix 47	AF2	C	181	196	Right-handed alpha
Helix 48	AF3	C	202	217	Right-handed alpha
Helix 49	AF4	C	222	232	Right-handed alpha
Helix 50	AF5	C	252	257	Right-handed alpha
Helix 51	AF6	C	258	262	Right-handed 310
Helix 52	AF7	C	263	268	Right-handed 310
Helix 53	AF8	C	273	285	Right-handed alpha
Helix 54	AF9	C	286	288	Right-handed 310
Helix 55	AG1	C	289	296	Right-handed alpha
Helix 56	AG2	C	301	305	Right-handed 310
Helix 57	AG3	C	308	321	Right-handed alpha
Helix 58	AG4	C	334	336	Right-handed 310
Helix 59	AG5	C	337	347	Right-handed alpha
Helix 60	AG6	C	348	349	Right-handed 310
Helix 61	AG7	C	350	355	Right-handed 310
Helix 62	AG8	C	359	366	Right-handed alpha
Helix 63	AG9	C	368	374	Right-handed alpha
Helix 64	AH1	D	55	60	Right-handed alpha
Helix 65	AH2	D	78	93	Right-handed alpha
Helix 66	AH3	D	97	101	Right-handed 310
Helix 67	AH4	D	112	126	Right-handed alpha
Helix 68	AH5	D	137	145	Right-handed alpha
Helix 69	AH6	D	172	175	Right-handed 310
Helix 70	AH7	D	181	196	Right-handed alpha
Helix 71	AH8	D	202	217	Right-handed alpha
Helix 72	AH9	D	222	232	Right-handed alpha
Helix 73	AI1	D	252	257	Right-handed alpha
Helix 74	AI2	D	258	262	Right-handed 310
Helix 75	AI3	D	263	268	Right-handed 310
Helix 76	AI4	D	273	285	Right-handed alpha
Helix 77	AI5	D	286	288	Right-handed 310
Helix 78	AI6	D	289	296	Right-handed alpha
Helix 79	AI7	D	301	305	Right-handed 310
Helix 80	AI8	D	308	321	Right-handed alpha
Helix 81	AI9	D	334	336	Right-handed 310
Helix 82	AJ1	D	337	347	Right-handed alpha
Helix 83	AJ2	D	348	355	Right-handed 310
Helix 84	AJ3	D	359	366	Right-handed alpha
Helix 85	AJ4	D	367	372	Right-handed 310
Helix 86	AJ5	E	30	34	Right-handed 310
Helix 87	AJ6	E	76	78	Right-handed 310
Helix 88	AJ7	E	89	93	Right-handed 310
Helix 89	AJ8	F	30	34	Right-handed 310
Helix 90	AJ9	F	76	78	Right-handed 310
Helix 91	AK1	F	89	93	Right-handed 310
Helix 92	AK2	G	2	16	Right-handed alpha
Helix 93	AK3	H	2	15	Right-handed alpha

There are 30 sheets in PDB entry 5NBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	107	112	parallel
Strand 5	A	136	141	parallel
Strand 6	A	470	471	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	69	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	79	80	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	181	183	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	155	160	anti-parallel
Strand 4	A	408	411	parallel
Strand 5	A	439	441	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	277	280	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	25	30	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	107	112	parallel
Strand 5	B	136	141	parallel
Strand 6	B	470	471	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	69	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	79	80	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	181	183	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	408	411	parallel
Strand 5	B	439	440	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	217	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	277	279	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	20	28	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	71	75	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	120	125	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	35	41	anti-parallel
Strand 5	E	48	53	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	120	125	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	115	116	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	71	75	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	120	125	parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	120	125	parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBM