Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NBN entry

There are 10 chains in PDB entry 5NBN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	ASN 485
B	SER 15	ASN 485
C	VAL 5	GLU 72
C	GLY 74	CYS 374
D	VAL 5	GLU 72
D	GLY 74	CYS 374
E	ASN 257	TYR 881
F	ASN 257	TYR 881
G	THR 472	ILE 557
H	THR 472	ILE 557

There are143 helices in PDB entry 5NBN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	63	Right-handed alpha
Helix 2	AA2	A	82	97	Right-handed alpha
Helix 3	AA3	A	117	130	Right-handed alpha
Helix 4	AA4	A	142	151	Right-handed alpha
Helix 5	AA5	A	177	180	Right-handed 310
Helix 6	AA6	A	186	199	Right-handed alpha
Helix 7	AA7	A	205	207	Right-handed 310
Helix 8	AA8	A	226	236	Right-handed alpha
Helix 9	AA9	A	237	246	Right-handed alpha
Helix 10	AB1	A	255	262	Right-handed 310
Helix 11	AB2	A	281	291	Right-handed alpha
Helix 12	AB3	A	296	300	Right-handed 310
Helix 13	AB4	A	384	395	Right-handed alpha
Helix 14	AB5	A	400	407	Right-handed alpha
Helix 15	AB6	A	412	417	Right-handed 310
Helix 16	AB7	A	419	432	Right-handed alpha
Helix 17	AB8	A	444	449	Right-handed 310
Helix 18	AB9	A	450	461	Right-handed alpha
Helix 19	AC1	A	472	478	Right-handed alpha
Helix 20	AC2	B	58	63	Right-handed alpha
Helix 21	AC3	B	82	97	Right-handed alpha
Helix 22	AC4	B	117	130	Right-handed alpha
Helix 23	AC5	B	142	151	Right-handed alpha
Helix 24	AC6	B	177	180	Right-handed 310
Helix 25	AC7	B	186	199	Right-handed alpha
Helix 26	AC8	B	226	236	Right-handed alpha
Helix 27	AC9	B	237	246	Right-handed alpha
Helix 28	AD1	B	255	262	Right-handed 310
Helix 29	AD2	B	281	291	Right-handed alpha
Helix 30	AD3	B	296	300	Right-handed 310
Helix 31	AD4	B	384	395	Right-handed alpha
Helix 32	AD5	B	400	407	Right-handed alpha
Helix 33	AD6	B	412	417	Right-handed 310
Helix 34	AD7	B	419	432	Right-handed alpha
Helix 35	AD8	B	445	449	Right-handed 310
Helix 36	AD9	B	450	461	Right-handed alpha
Helix 37	AE1	B	473	478	Right-handed alpha
Helix 38	AE2	C	55	61	Right-handed alpha
Helix 39	AE3	C	78	92	Right-handed alpha
Helix 40	AE4	C	97	101	Right-handed 310
Helix 41	AE5	C	112	127	Right-handed alpha
Helix 42	AE6	C	137	145	Right-handed alpha
Helix 43	AE7	C	181	196	Right-handed alpha
Helix 44	AE8	C	202	217	Right-handed alpha
Helix 45	AE9	C	222	233	Right-handed alpha
Helix 46	AF1	C	252	257	Right-handed alpha
Helix 47	AF2	C	258	262	Right-handed 310
Helix 48	AF3	C	263	268	Right-handed 310
Helix 49	AF4	C	273	283	Right-handed alpha
Helix 50	AF5	C	286	296	Right-handed alpha
Helix 51	AF6	C	301	305	Right-handed 310
Helix 52	AF7	C	308	321	Right-handed alpha
Helix 53	AF8	C	334	336	Right-handed 310
Helix 54	AF9	C	337	347	Right-handed alpha
Helix 55	AG1	C	348	349	Right-handed 310
Helix 56	AG2	C	350	355	Right-handed 310
Helix 57	AG3	C	359	366	Right-handed alpha
Helix 58	AG4	C	369	374	Right-handed alpha
Helix 59	AG5	D	55	61	Right-handed alpha
Helix 60	AG6	D	78	92	Right-handed alpha
Helix 61	AG7	D	97	101	Right-handed 310
Helix 62	AG8	D	112	127	Right-handed alpha
Helix 63	AG9	D	137	145	Right-handed alpha
Helix 64	AH1	D	181	196	Right-handed alpha
Helix 65	AH2	D	202	217	Right-handed alpha
Helix 66	AH3	D	222	233	Right-handed alpha
Helix 67	AH4	D	252	260	Right-handed alpha
Helix 68	AH5	D	261	262	Right-handed 310
Helix 69	AH6	D	263	268	Right-handed 310
Helix 70	AH7	D	273	283	Right-handed alpha
Helix 71	AH8	D	286	296	Right-handed alpha
Helix 72	AH9	D	301	305	Right-handed 310
Helix 73	AI1	D	308	321	Right-handed alpha
Helix 74	AI2	D	334	336	Right-handed 310
Helix 75	AI3	D	337	347	Right-handed alpha
Helix 76	AI4	D	348	350	Right-handed 310
Helix 77	AI5	D	351	356	Right-handed alpha
Helix 78	AI6	D	359	366	Right-handed alpha
Helix 79	AI7	D	369	374	Right-handed alpha
Helix 80	AI8	E	320	342	Right-handed alpha
Helix 81	AI9	E	350	354	Right-handed 310
Helix 82	AJ1	E	386	391	Right-handed alpha
Helix 83	AJ2	E	417	434	Right-handed alpha
Helix 84	AJ3	E	441	448	Right-handed 310
Helix 85	AJ4	E	459	473	Right-handed alpha
Helix 86	AJ5	E	484	492	Right-handed alpha
Helix 87	AJ6	E	520	523	Right-handed 310
Helix 88	AJ7	E	529	544	Right-handed alpha
Helix 89	AJ8	E	557	570	Right-handed alpha
Helix 90	AJ9	E	605	610	Right-handed alpha
Helix 91	AK1	E	611	613	Right-handed 310
Helix 92	AK2	E	614	621	Right-handed alpha
Helix 93	AK3	E	627	632	Right-handed alpha
Helix 94	AK4	E	650	659	Right-handed alpha
Helix 95	AK5	E	667	677	Right-handed alpha
Helix 96	AK6	E	677	687	Right-handed alpha
Helix 97	AK7	E	702	717	Right-handed alpha
Helix 98	AK8	E	719	721	Right-handed 310
Helix 99	AK9	E	722	729	Right-handed alpha
Helix 100	AL1	E	734	739	Right-handed 310
Helix 101	AL2	E	741	754	Right-handed alpha
Helix 102	AL3	E	755	759	Right-handed 310
Helix 103	AL4	E	762	780	Right-handed alpha
Helix 104	AL5	E	792	816	Right-handed alpha
Helix 105	AL6	E	840	851	Right-handed alpha
Helix 106	AL7	E	854	859	Right-handed alpha
Helix 107	AL8	E	862	869	Right-handed alpha
Helix 108	AL9	E	870	875	Right-handed 310
Helix 109	AM1	F	264	266	Right-handed 310
Helix 110	AM2	F	320	342	Right-handed alpha
Helix 111	AM3	F	350	354	Right-handed 310
Helix 112	AM4	F	386	391	Right-handed alpha
Helix 113	AM5	F	417	434	Right-handed alpha
Helix 114	AM6	F	441	448	Right-handed 310
Helix 115	AM7	F	459	473	Right-handed alpha
Helix 116	AM8	F	484	492	Right-handed alpha
Helix 117	AM9	F	520	523	Right-handed 310
Helix 118	AN1	F	529	544	Right-handed alpha
Helix 119	AN2	F	555	570	Right-handed alpha
Helix 120	AN3	F	605	610	Right-handed alpha
Helix 121	AN4	F	611	613	Right-handed 310
Helix 122	AN5	F	614	621	Right-handed alpha
Helix 123	AN6	F	627	632	Right-handed alpha
Helix 124	AN7	F	650	659	Right-handed alpha
Helix 125	AN8	F	667	677	Right-handed alpha
Helix 126	AN9	F	677	687	Right-handed alpha
Helix 127	AO1	F	702	717	Right-handed alpha
Helix 128	AO2	F	719	721	Right-handed 310
Helix 129	AO3	F	722	729	Right-handed alpha
Helix 130	AO4	F	735	739	Right-handed 310
Helix 131	AO5	F	741	754	Right-handed alpha
Helix 132	AO6	F	755	759	Right-handed 310
Helix 133	AO7	F	762	780	Right-handed alpha
Helix 134	AO8	F	784	788	Right-handed 310
Helix 135	AO9	F	789	816	Right-handed alpha
Helix 136	AP1	F	840	851	Right-handed alpha
Helix 137	AP2	F	854	859	Right-handed alpha
Helix 138	AP3	F	862	869	Right-handed alpha
Helix 139	AP4	F	870	875	Right-handed 310
Helix 140	AP5	G	473	519	Right-handed alpha
Helix 141	AP6	G	521	557	Right-handed alpha
Helix 142	AP7	H	473	519	Right-handed alpha
Helix 143	AP8	H	521	557	Right-handed alpha

There are 36 sheets in PDB entry 5NBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	17	20	anti-parallel
Strand 4	A	108	112	parallel
Strand 5	A	136	141	parallel
Strand 6	A	470	471	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	69	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	79	80	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	181	183	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	155	160	anti-parallel
Strand 4	A	408	411	parallel
Strand 5	A	439	440	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	277	279	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	25	30	anti-parallel
Strand 3	B	17	20	anti-parallel
Strand 4	B	108	112	parallel
Strand 5	B	137	141	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	69	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	79	80	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	181	183	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	408	411	parallel
Strand 5	B	439	440	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	217	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	277	279	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	292	first strand
Strand 2	E	277	281	anti-parallel
Strand 3	E	268	272	anti-parallel
Strand 4	E	449	454	parallel
Strand 5	E	478	483	parallel
Strand 6	E	860	861	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	384	385	first strand
Strand 2	E	295	298	anti-parallel
Strand 3	E	397	400	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	360	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	580	586	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	403	404	first strand
Strand 2	E	407	408	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	517	518	first strand
Strand 2	E	508	514	anti-parallel
Strand 3	E	524	526	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	517	518	first strand
Strand 2	E	508	514	anti-parallel
Strand 3	E	498	503	anti-parallel
Strand 4	E	730	733	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	292	first strand
Strand 2	F	277	281	anti-parallel
Strand 3	F	268	272	anti-parallel
Strand 4	F	449	454	parallel
Strand 5	F	478	483	parallel
Strand 6	F	860	861	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	384	385	first strand
Strand 2	F	295	298	anti-parallel
Strand 3	F	397	400	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	360	first strand
Strand 2	F	593	600	anti-parallel
Strand 3	F	580	586	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	403	404	first strand
Strand 2	F	407	408	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	517	518	first strand
Strand 2	F	508	514	anti-parallel
Strand 3	F	524	526	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	517	518	first strand
Strand 2	F	508	514	anti-parallel
Strand 3	F	498	503	anti-parallel
Strand 4	F	730	733	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NBN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBN