Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NBO entry

There are 2 chains in PDB entry 5NBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35LEU 271
B
 ILE 35LEU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5NBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
151 157Right-handed alpha
Helix 2
AA2
A
173 176Right-handed 310
Helix 3
AA3
A
241 245Right-handed 310
Helix 4
AA4
A
248 252Right-handed 310
Helix 5
AA5
B
151 157Right-handed alpha
Helix 6
AA6
B
224 228Right-handed 310
Helix 7
AA7
B
241 245Right-handed 310
Helix 8
AA8
B
248 252Right-handed 310
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There are 6 sheets in PDB entry 5NBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
260 271anti-parallel
Strand 3
A
79 89anti-parallel
Strand 4
A
71 76anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
92 95parallel
Strand 3
A
79 89anti-parallel
Strand 4
A
260 271anti-parallel
Strand 5
A
110 116anti-parallel
Strand 6
A
196 202anti-parallel
Strand 7
A
206 211anti-parallel
Strand 8
A
214 220anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
97 99anti-parallel
Strand 3
A
231 239anti-parallel
Strand 4
A
124 132anti-parallel
Strand 5
A
143 148anti-parallel
Strand 6
A
163 170anti-parallel
Strand 7
A
178 185anti-parallel
Strand 8
B
178 185anti-parallel
Strand 9
B
163 170anti-parallel
Strand 10
B
143 148anti-parallel
Strand 11
B
124 132anti-parallel
Strand 12
B
231 239anti-parallel
Strand 13
B
97 99anti-parallel
Strand 14
B
50 51anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
231 239anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
163 170anti-parallel
Strand 6
A
178 185anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
163 170anti-parallel
Strand 9
B
143 148anti-parallel
Strand 10
B
124 132anti-parallel
Strand 11
B
231 239anti-parallel
Strand 12
B
105 106anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
260 271anti-parallel
Strand 3
B
79 89anti-parallel
Strand 4
B
71 76anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
92 95parallel
Strand 3
B
79 89anti-parallel
Strand 4
B
260 271anti-parallel
Strand 5
B
110 116anti-parallel
Strand 6
B
196 202anti-parallel
Strand 7
B
206 211anti-parallel
Strand 8
B
214 220anti-parallel
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