Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NBQ entry

There are 7 chains in PDB entry 5NBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 996	ASP 1285
B	VAL 995	PRO 1287
C	ALA 994	ALA 1286
D	ASP 1104	LYS 1230
E	SER 1105	ALA 1229
F	THR 1106	CYS 1228
G	SER 42	ASN 70

There are 52 helices in PDB entry 5NBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	998	1004	Right-handed 310
Helix 2	AA2	A	1012	1032	Right-handed alpha
Helix 3	AA3	A	1039	1058	Right-handed alpha
Helix 4	AA4	A	1075	1090	Right-handed alpha
Helix 5	AA5	A	1096	1112	Right-handed alpha
Helix 6	AA6	A	1126	1135	Right-handed 310
Helix 7	AA7	A	1138	1159	Right-handed alpha
Helix 8	AA8	A	1164	1180	Right-handed alpha
Helix 9	AA9	A	1185	1199	Right-handed alpha
Helix 10	AB1	A	1203	1214	Right-handed alpha
Helix 11	AB2	A	1215	1218	Right-handed 310
Helix 12	AB3	A	1225	1244	Right-handed alpha
Helix 13	AB4	A	1248	1259	Right-handed alpha
Helix 14	AB5	A	1268	1285	Right-handed alpha
Helix 15	AB6	B	996	1004	Right-handed 310
Helix 16	AB7	B	1012	1032	Right-handed alpha
Helix 17	AB8	B	1033	1038	Right-handed alpha
Helix 18	AB9	B	1039	1058	Right-handed alpha
Helix 19	AC1	B	1075	1090	Right-handed alpha
Helix 20	AC2	B	1096	1112	Right-handed alpha
Helix 21	AC3	B	1126	1135	Right-handed 310
Helix 22	AC4	B	1138	1159	Right-handed alpha
Helix 23	AC5	B	1164	1180	Right-handed alpha
Helix 24	AC6	B	1185	1199	Right-handed alpha
Helix 25	AC7	B	1203	1214	Right-handed alpha
Helix 26	AC8	B	1215	1218	Right-handed 310
Helix 27	AC9	B	1225	1244	Right-handed alpha
Helix 28	AD1	B	1248	1259	Right-handed alpha
Helix 29	AD2	B	1268	1285	Right-handed alpha
Helix 30	AD3	C	996	1004	Right-handed 310
Helix 31	AD4	C	1012	1031	Right-handed alpha
Helix 32	AD5	C	1033	1038	Right-handed alpha
Helix 33	AD6	C	1039	1058	Right-handed alpha
Helix 34	AD7	C	1075	1090	Right-handed alpha
Helix 35	AD8	C	1096	1112	Right-handed alpha
Helix 36	AD9	C	1126	1135	Right-handed 310
Helix 37	AE1	C	1138	1159	Right-handed alpha
Helix 38	AE2	C	1164	1180	Right-handed alpha
Helix 39	AE3	C	1185	1199	Right-handed alpha
Helix 40	AE4	C	1203	1214	Right-handed alpha
Helix 41	AE5	C	1215	1218	Right-handed 310
Helix 42	AE6	C	1225	1244	Right-handed alpha
Helix 43	AE7	C	1248	1259	Right-handed alpha
Helix 44	AE8	C	1268	1285	Right-handed alpha
Helix 45	AE9	D	1170	1177	Right-handed alpha
Helix 46	AF1	D	1210	1213	Right-handed 310
Helix 47	AF2	E	1170	1177	Right-handed alpha
Helix 48	AF3	F	1170	1177	Right-handed alpha
Helix 49	AF4	G	92	103	Right-handed alpha
Helix 50	AF5	G	163	170	Right-handed alpha
Helix 51	AF6	I	92	103	Right-handed alpha
Helix 52	AF7	I	163	170	Right-handed alpha

There are 15 sheets in PDB entry 5NBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1118	1120	first strand
Strand 2	D	1133	1138	anti-parallel
Strand 3	D	1149	1151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1143	1145	first strand
Strand 2	D	1162	1164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1167	1169	first strand
Strand 2	D	1189	1191	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1179	1181	first strand
Strand 2	D	1196	1201	anti-parallel
Strand 3	D	1215	1217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1206	1207	first strand
Strand 2	D	1228	1229	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1118	1120	first strand
Strand 2	E	1133	1138	anti-parallel
Strand 3	E	1149	1153	anti-parallel
Strand 4	E	1156	1157	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1143	1145	first strand
Strand 2	E	1162	1164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1167	1169	first strand
Strand 2	E	1189	1191	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1196	1198	first strand
Strand 2	E	1215	1217	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1118	1120	first strand
Strand 2	F	1133	1138	anti-parallel
Strand 3	F	1149	1153	anti-parallel
Strand 4	F	1156	1157	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1143	1145	first strand
Strand 2	F	1162	1164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1167	1169	first strand
Strand 2	F	1189	1191	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1179	1181	first strand
Strand 2	F	1196	1201	anti-parallel
Strand 3	F	1215	1217	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	107	first strand
Strand 2	G	128	136	anti-parallel
Strand 3	G	139	148	anti-parallel
Strand 4	G	156	162	anti-parallel
Strand 5	G	43	51	anti-parallel
Strand 6	G	57	67	anti-parallel
Strand 7	G	72	78	anti-parallel
Strand 8	G	81	87	anti-parallel
Strand 9	G	110	111	anti-parallel
Strand 10	G	124	125	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	107	first strand
Strand 2	I	128	136	anti-parallel
Strand 3	I	139	148	anti-parallel
Strand 4	I	156	162	anti-parallel
Strand 5	I	43	51	anti-parallel
Strand 6	I	57	67	anti-parallel
Strand 7	I	72	78	anti-parallel
Strand 8	I	81	87	anti-parallel
Strand 9	I	110	111	anti-parallel
Strand 10	I	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBQ