Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NBS entry

There are 2 chains in PDB entry 5NBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	PRO 857
B	LEU 17	PRO 457

There are 57 helices in PDB entry 5NBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	48	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	104	111	Right-handed alpha
Helix 5	AA5	A	113	131	Right-handed alpha
Helix 6	AA6	A	152	156	Right-handed 310
Helix 7	AA7	A	160	178	Right-handed alpha
Helix 8	AA8	A	197	204	Right-handed alpha
Helix 9	AA9	A	217	224	Right-handed alpha
Helix 10	AB1	A	226	235	Right-handed alpha
Helix 11	AB2	A	255	260	Right-handed alpha
Helix 12	AB3	A	282	289	Right-handed alpha
Helix 13	AB4	A	309	318	Right-handed alpha
Helix 14	AB5	A	322	340	Right-handed alpha
Helix 15	AB6	A	383	395	Right-handed alpha
Helix 16	AB7	A	418	421	Right-handed 310
Helix 17	AB8	A	430	434	Right-handed 310
Helix 18	AB9	A	456	469	Right-handed alpha
Helix 19	AC1	A	480	489	Right-handed alpha
Helix 20	AC2	A	525	537	Right-handed alpha
Helix 21	AC3	A	573	583	Right-handed alpha
Helix 22	AC4	A	600	604	Right-handed 310
Helix 23	AC5	A	628	637	Right-handed alpha
Helix 24	AC6	A	687	692	Right-handed 310
Helix 25	AC7	A	713	719	Right-handed alpha
Helix 26	AC8	A	726	731	Right-handed alpha
Helix 27	AC9	A	755	759	Right-handed 310
Helix 28	AD1	A	820	823	Right-handed 310
Helix 29	AD2	B	36	48	Right-handed alpha
Helix 30	AD3	B	51	60	Right-handed alpha
Helix 31	AD4	B	76	80	Right-handed 310
Helix 32	AD5	B	104	111	Right-handed alpha
Helix 33	AD6	B	113	131	Right-handed alpha
Helix 34	AD7	B	152	156	Right-handed 310
Helix 35	AD8	B	160	178	Right-handed alpha
Helix 36	AD9	B	197	204	Right-handed alpha
Helix 37	AE1	B	217	224	Right-handed alpha
Helix 38	AE2	B	225	235	Right-handed alpha
Helix 39	AE3	B	251	254	Right-handed 310
Helix 40	AE4	B	255	260	Right-handed alpha
Helix 41	AE5	B	282	290	Right-handed alpha
Helix 42	AE6	B	309	318	Right-handed alpha
Helix 43	AE7	B	322	340	Right-handed alpha
Helix 44	AE8	B	383	395	Right-handed alpha
Helix 45	AE9	B	418	421	Right-handed 310
Helix 46	AF1	B	430	434	Right-handed 310
Helix 47	AF2	B	456	469	Right-handed alpha
Helix 48	AF3	B	480	489	Right-handed alpha
Helix 49	AF4	B	525	537	Right-handed alpha
Helix 50	AF5	B	573	583	Right-handed alpha
Helix 51	AF6	B	600	604	Right-handed 310
Helix 52	AF7	B	629	637	Right-handed alpha
Helix 53	AF8	B	687	692	Right-handed 310
Helix 54	AF9	B	713	719	Right-handed alpha
Helix 55	AG1	B	726	731	Right-handed alpha
Helix 56	AG2	B	755	759	Right-handed 310
Helix 57	AG3	B	820	823	Right-handed 310

There are 20 sheets in PDB entry 5NBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	85	87	anti-parallel
Strand 3	A	135	136	parallel
Strand 4	A	181	187	parallel
Strand 5	A	239	242	parallel
Strand 6	A	272	275	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	246	247	anti-parallel
Strand 3	A	213	215	parallel
Strand 4	A	619	621	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	369	373	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	401	first strand
Strand 2	A	561	566	anti-parallel
Strand 3	A	540	545	parallel
Strand 4	A	493	500	parallel
Strand 5	A	412	416	parallel
Strand 6	A	471	475	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	513	514	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	640	642	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	662	first strand
Strand 2	A	761	771	anti-parallel
Strand 3	A	810	818	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	779	first strand
Strand 2	A	803	805	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	800	first strand
Strand 2	A	782	786	anti-parallel
Strand 3	A	840	844	anti-parallel
Strand 4	A	852	855	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	826	first strand
Strand 2	A	831	833	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	85	87	anti-parallel
Strand 3	B	135	136	parallel
Strand 4	B	181	187	parallel
Strand 5	B	239	242	parallel
Strand 6	B	272	275	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	213	215	parallel
Strand 3	B	619	621	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	364	first strand
Strand 2	B	369	373	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	401	first strand
Strand 2	B	561	566	anti-parallel
Strand 3	B	540	545	parallel
Strand 4	B	493	500	parallel
Strand 5	B	412	416	parallel
Strand 6	B	471	475	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	513	514	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	597	first strand
Strand 2	B	640	642	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	662	first strand
Strand 2	B	761	771	anti-parallel
Strand 3	B	810	818	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	779	first strand
Strand 2	B	803	805	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	800	first strand
Strand 2	B	782	786	anti-parallel
Strand 3	B	840	844	anti-parallel
Strand 4	B	852	855	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	826	first strand
Strand 2	B	831	833	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBS