Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NBT entry

There are 4 chains in PDB entry 5NBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 487SER 656
B
 SER 2LEU 78
C
 ASP 489SER 656
D
 SER 2LEU 78
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5NBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
487 497Right-handed alpha
Helix 2
AA2
A
497 520Right-handed alpha
Helix 3
AA3
A
523 535Right-handed alpha
Helix 4
AA4
A
536 548Right-handed alpha
Helix 5
AA5
A
549 554Right-handed 310
Helix 6
AA6
A
555 571Right-handed alpha
Helix 7
AA7
A
574 597Right-handed alpha
Helix 8
AA8
A
616 635Right-handed alpha
Helix 9
AA9
A
646 654Right-handed alpha
Helix 10
AB1
B
3 20Right-handed alpha
Helix 11
AB2
B
21 36Right-handed alpha
Helix 12
AB3
B
50 75Right-handed alpha
Helix 13
AB4
C
490 496Right-handed alpha
Helix 14
AB5
C
497 520Right-handed alpha
Helix 15
AB6
C
523 535Right-handed alpha
Helix 16
AB7
C
536 548Right-handed alpha
Helix 17
AB8
C
549 554Right-handed 310
Helix 18
AB9
C
555 571Right-handed alpha
Helix 19
AC1
C
574 600Right-handed alpha
Helix 20
AC2
C
612 635Right-handed alpha
Helix 21
AC3
C
645 654Right-handed alpha
Helix 22
AC4
D
4 20Right-handed alpha
Helix 23
AC5
D
21 36Right-handed alpha
Helix 24
AC6
D
46 48Right-handed 310
Helix 25
AC7
D
49 75Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5NBT
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il