Analysis of interatomic Contacts of Structural Units in PDB entry:
5NBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NBY entry

There is 1 chain in PDB entry 5NBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2GLU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5NBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
54 68Right-handed alpha
Helix 3
AA3
A
106 124Right-handed alpha
Helix 4
AA4
A
125 127Right-handed 310
Helix 5
AA5
A
128 137Right-handed alpha
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
169 192Right-handed alpha
Helix 8
AA8
A
211 233Right-handed alpha
Helix 9
AA9
A
237 242Right-handed 310
Helix 10
AB1
A
270 283Right-handed alpha
Helix 11
AB2
A
284 286Right-handed 310
Helix 12
AB3
A
294 299Right-handed alpha
Helix 13
AB4
A
328 330Right-handed 310
Helix 14
AB5
A
334 346Right-handed alpha
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There are 3 sheets in PDB entry 5NBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 81first strand
Strand 2
A
3 11anti-parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
36 43anti-parallel
Strand 5
A
94 97parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
244 260anti-parallel
Strand 5
A
263 269anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
244 260anti-parallel
Strand 5
A
290 293parallel
Strand 6
A
321 326anti-parallel
Strand 7
A
306 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il