Analysis of interatomic Contacts of Structural Units in PDB entry:
5NC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NC8 entry

There are 2 chains in PDB entry 5NC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 407TRP 569
B
 ASN 407GLY 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5NC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
415 428Right-handed alpha
Helix 2
AA2
A
459 466Right-handed alpha
Helix 3
AA3
A
480 495Right-handed alpha
Helix 4
AA4
A
506 516Right-handed alpha
Helix 5
AA5
A
525 540Right-handed alpha
Helix 6
AA6
A
543 568Right-handed alpha
Helix 7
AA7
B
415 428Right-handed alpha
Helix 8
AA8
B
459 466Right-handed alpha
Helix 9
AA9
B
480 495Right-handed alpha
Helix 10
AB1
B
506 516Right-handed alpha
Helix 11
AB2
B
525 540Right-handed alpha
Helix 12
AB3
B
543 566Right-handed alpha
Helix 13
AB4
B
567 569Right-handed 310
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There are 2 sheets in PDB entry 5NC8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
431 436parallel
Strand 3
A
408 412parallel
Strand 4
A
473 476parallel
Strand 5
A
499 504parallel
Strand 6
A
521 523parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
432 436parallel
Strand 3
B
409 412parallel
Strand 4
B
473 476parallel
Strand 5
B
499 504parallel
Strand 6
B
521 523parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il